Cow genome map
| Conread name: | rpldo0109_b3.y1 |
| Conread position: | 59-284 |
| Cow position: | chr7:9928864-9928654 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 59-300 |
| Cow position: | chr7:61762911-61763142 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 108, 57 |
| Conread position: | 59-301 |
| Cow position: | chr7:4840397-4840621 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 59-303 |
| Cow position: | chr7:49467430-49467200 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 59-311 |
| Cow position: | chr7:47876229-47875987 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 59-376 |
| Cow position: | chr7:53153550-53153252 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 230, 53 |
| Conread position: | 59-381 |
| Cow position: | chr7:1261577-1261883 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 59-383 |
| Cow position: | chr7:31171391-31171086 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 57 |
| Conread position: | 59-385 |
| Cow position: | chr7:59438030-59438339 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 59-386 |
| Cow position: | chr7:268546-268863 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 59-388 |
| Cow position: | chr7:5208971-5209293 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 202, 57 |
| Conread position: | 59-388 |
| Cow position: | chr7:42431379-42431695 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 53 |
| Conread position: | 59-388 |
| Cow position: | chr7:48815178-48815503 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 59-388 |
| Cow position: | chr7:50076168-50075855 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 59-388 |
| Cow position: | chr7:53988601-53988930 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 59-390 |
| Cow position: | chr7:48666983-48667300 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 211, 24 |
| Conread position: | 59-392 |
| Cow position: | chr7:12994716-12995035 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 59-392 |
| Cow position: | chr7:34412731-34412416 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 59-392 |
| Cow position: | chr7:49647918-49648240 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 60-388 |
| Cow position: | chr7:23818489-23818802 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 60-388 |
| Cow position: | chr7:44544511-44544197 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 121, 11 |
| Conread position: | 61-378 |
| Cow position: | chr7:42296510-42296208 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 34 |
| Conread position: | 61-379 |
| Cow position: | chr7:10760301-10759997 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 57 |
| Conread position: | 61-388 |
| Cow position: | chr7:18256141-18255828 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 227, 57 |
| Conread position: | 61-392 |
| Cow position: | chr7:13645803-13645478 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 59 |
| Conread position: | 61-392 |
| Cow position: | chr7:46187806-46188123 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 124, 40 |
| Conread position: | 62-285 |
| Cow position: | chr7:13229152-13228947 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 62-301 |
| Cow position: | chr7:23090868-23091096 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 140, 48 |
| Conread position: | 62-338 |
| Cow position: | chr7:58351345-58351080 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 62-388 |
| Cow position: | chr7:17591029-17591344 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 81, 60 |
| Conread position: | 62-392 |
| Cow position: | chr7:15654514-15654200 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 12 |
| Conread position: | 62-392 |
| Cow position: | chr7:34433718-34433403 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 46 |
| Conread position: | 62-392 |
| Cow position: | chr7:49844482-49844153 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 65-249 |
| Cow position: | chr7:39988004-39988169 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 65-291 |
| Cow position: | chr7:42334926-42335141 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 65-313 |
| Cow position: | chr7:13848544-13848783 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 65-389 |
| Cow position: | chr7:59688095-59688413 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 47 |
| Conread position: | 65-392 |
| Cow position: | chr7:27515805-27515484 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 260, 43 |
| Conread position: | 68-287 |
| Cow position: | chr7:41297094-41296883 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 68-319 |
| Cow position: | chr7:34083241-34083479 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 100, 44 |
| Conread position: | 69-388 |
| Cow position: | chr7:35779016-35779319 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 39 |
| Conread position: | 70-331 |
| Cow position: | chr7:9661746-9661489 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 73-388 |
| Cow position: | chr7:7096480-7096175 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 216, 49 |
| Conread position: | 77-361 |
| Cow position: | chr7:68772937-68772651 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 77-388 |
| Cow position: | chr7:39529412-39529129 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 247, 33 |
| Conread position: | 121-319 |
| Cow position: | chr7:11951951-11952148 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 168, 12 |
| Conread position: | 135-287 |
| Cow position: | chr7:36995979-36996125 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 135-370 |
| Cow position: | chr7:30044029-30044265 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 135-385 |
| Cow position: | chr7:44039115-44039360 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 23 |
| Conread position: | 136-388 |
| Cow position: | chr7:53361759-53361505 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 136-389 |
| Cow position: | chr7:15566391-15566642 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 145-347 |
| Cow position: | chr7:21228905-21228706 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 179, 58 |
Show alignments to all cow chromosomes.