Cow genome map
| Conread name: | rpldo0109_b3.y1 |
| Conread position: | 44-351 |
| Cow position: | chrX:27117488-27117782 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 58-303 |
| Cow position: | chrX:45448184-45448425 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 58-388 |
| Cow position: | chrX:24169780-24169459 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 122, 55 |
| Conread position: | 59-270 |
| Cow position: | chrX:39352114-39351909 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 102, 53 |
| Conread position: | 59-287 |
| Cow position: | chrX:22623993-22624209 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 59-300 |
| Cow position: | chrX:20131349-20131115 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 59-311 |
| Cow position: | chrX:17200328-17200581 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 107, 67 |
| Conread position: | 59-361 |
| Cow position: | chrX:13785842-13785543 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 59-362 |
| Cow position: | chrX:41594741-41594443 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 59-372 |
| Cow position: | chrX:27019746-27020042 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 59 |
| Conread position: | 59-386 |
| Cow position: | chrX:11083069-11082760 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 30 |
| Conread position: | 59-388 |
| Cow position: | chrX:14974197-14973878 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 61 |
| Conread position: | 59-388 |
| Cow position: | chrX:16790276-16789982 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 165, 59 |
| Conread position: | 59-388 |
| Cow position: | chrX:17497637-17497952 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 59 |
| Conread position: | 59-388 |
| Cow position: | chrX:25281949-25281612 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 59-388 |
| Cow position: | chrX:35288195-35288515 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 98, 59 |
| Conread position: | 59-388 |
| Cow position: | chrX:42470396-42470081 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 53 |
| Conread position: | 59-392 |
| Cow position: | chrX:32871245-32870926 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 61 |
| Conread position: | 61-285 |
| Cow position: | chrX:33493275-33493483 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 61-296 |
| Cow position: | chrX:17265508-17265283 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 61-383 |
| Cow position: | chrX:32128451-32128130 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 228, 51 |
| Conread position: | 61-388 |
| Cow position: | chrX:3807936-3808264 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 61 |
| Conread position: | 61-388 |
| Cow position: | chrX:4633314-4632995 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 61-389 |
| Cow position: | chrX:34238263-34238577 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 52 |
| Conread position: | 61-392 |
| Cow position: | chrX:878827-878512 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 57 |
| Conread position: | 61-392 |
| Cow position: | chrX:30981625-30981304 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 62-331 |
| Cow position: | chrX:21415621-21415886 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 62-388 |
| Cow position: | chrX:37071944-37072260 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 60 |
| Conread position: | 62-388 |
| Cow position: | chrX:43648214-43647887 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 112, 60 |
| Conread position: | 62-390 |
| Cow position: | chrX:41122614-41122929 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 62-392 |
| Cow position: | chrX:10415981-10415665 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 63-388 |
| Cow position: | chrX:6654783-6654446 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 65-388 |
| Cow position: | chrX:30143737-30143429 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 223, 53 |
| Conread position: | 65-392 |
| Cow position: | chrX:20340343-20340031 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 135-298 |
| Cow position: | chrX:6695745-6695580 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 32, 113 |
| Conread position: | 135-388 |
| Cow position: | chrX:42171694-42171444 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 150-380 |
| Cow position: | chrX:7178528-7178755 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 157-371 |
| Cow position: | chrX:15545520-15545733 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 132, 173 |
Show alignments to all cow chromosomes.