Cow genome map

Conread name: rpliv0128_b16.y1

Conread position: 1-187
Cow position:
Alignm length: 189
Alignm identity: 146
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 36, 97

Conread position: 1-256
Cow position:
Alignm length: 264
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 189

Conread position: 1-256
Cow position:
Alignm length: 268
Alignm identity: 201
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 10, 6

Conread position: 1-256
Cow position:
Alignm length: 264
Alignm identity: 200
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 32, 149

Conread position: 2-171
Cow position:
Alignm length: 171
Alignm identity: 141
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 33, 119

Conread position: 2-181
Cow position:
Alignm length: 181
Alignm identity: 139
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 35, 7

Conread position: 2-187
Cow position:
Alignm length: 188
Alignm identity: 146
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 2-211
Cow position:
Alignm length: 211
Alignm identity: 158
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 36, 129

Conread position: 2-240
Cow position:
Alignm length: 246
Alignm identity: 189
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 130

Conread position: 2-249
Cow position:
Alignm length: 250
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 189, 34

Conread position: 2-252
Cow position:
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-252
Cow position:
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 184

Conread position: 2-253
Cow position:
Alignm length: 260
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 184

Conread position: 2-253
Cow position:
Alignm length: 260
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-253
Cow position:
Alignm length: 259
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-253
Cow position:
Alignm length: 260
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 188

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 187

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 24

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position:
Alignm length: 260
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 11

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 189
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 36, 96

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 184

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position:
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 126

Conread position: 2-256
Cow position:
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 195
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 35, 96

Conread position: 2-256
Cow position:
Alignm length: 265
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 199

Conread position: 2-256
Cow position:
Alignm length: 260
Alignm identity: 193
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 125, 143

Conread position: 2-256
Cow position:
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 61

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 258
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 2-256
Cow position:
Alignm length: 260
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 87

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 184

Conread position: 2-256
Cow position:
Alignm length: 259
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position:
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 95

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 184

Conread position: 2-256
Cow position:
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 32

Conread position: 2-256
Cow position:
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 103

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 188

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 35, 76

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 258
Alignm identity: 192
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 35, 119

Conread position: 2-256
Cow position:
Alignm length: 261
Alignm identity: 194
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 35, 96

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 200
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 35, 157

Conread position: 2-256
Cow position:
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 88

Conread position: 2-256
Cow position:
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 149

Conread position: 2-256
Cow position:
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-257
Cow position:
Alignm length: 260
Alignm identity: 195
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 35, 107

Conread position: 2-257
Cow position:
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-265
Cow position:
Alignm length: 270
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-265
Cow position:
Alignm length: 267
Alignm identity: 184
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 35, 56

Conread position: 2-265
Cow position:
Alignm length: 266
Alignm identity: 190
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 35, 209

Conread position: 2-270
Cow position:
Alignm length: 274
Alignm identity: 201
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 35, 187

Conread position: 2-272
Cow position:
Alignm length: 275
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-274
Cow position:
Alignm length: 283
Alignm identity: 207
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 35, 129

Conread position: 3-170
Cow position:
Alignm length: 169
Alignm identity: 137
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 142

Conread position: 3-190
Cow position:
Alignm length: 190
Alignm identity: 149
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 44

Conread position: 3-239
Cow position:
Alignm length: 249
Alignm identity: 192
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 34, 59

Conread position: 3-244
Cow position:
Alignm length: 249
Alignm identity: 184
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 90, 190

Conread position: 3-252
Cow position:
Alignm length: 257
Alignm identity: 198
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 59

Conread position: 3-253
Cow position:
Alignm length: 259
Alignm identity: 183
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 32, 79

Conread position: 3-256
Cow position:
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 190

Conread position: 3-256
Cow position:
Alignm length: 256
Alignm identity: 189
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 34, 58

Conread position: 3-256
Cow position:
Alignm length: 259
Alignm identity: 188
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 34, 87

Conread position: 3-256
Cow position:
Alignm length: 257
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 155

Conread position: 3-256
Cow position:
Alignm length: 261
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 118

Conread position: 3-256
Cow position:
Alignm length: 259
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 29

Conread position: 3-265
Cow position:
Alignm length: 263
Alignm identity: 185
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 3-265
Cow position:
Alignm length: 267
Alignm identity: 191
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 32, 0

Conread position: 3-265
Cow position:
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 105

Conread position: 3-272
Cow position:
Alignm length: 275
Alignm identity: 199
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 34, 109

Conread position: 3-302
Cow position:
Alignm length: 310
Alignm identity: 209
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 30, 130

Conread position: 3-302
Cow position:
Alignm length: 305
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 224

Conread position: 4-170
Cow position:
Alignm length: 169
Alignm identity: 138
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 33, 86

Conread position: 4-186
Cow position:
Alignm length: 191
Alignm identity: 145
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 4-187
Cow position:
Alignm length: 186
Alignm identity: 139
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 33, 9

Conread position: 4-253
Cow position:
Alignm length: 253
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 6-258
Cow position:
Alignm length: 256
Alignm identity: 184
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 12, 31

Conread position: 8-253
Cow position:
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 183

Conread position: 9-253
Cow position:
Alignm length: 248
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 86

Conread position: 13-256
Cow position:
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 177

Conread position: 13-256
Cow position:
Alignm length: 253
Alignm identity: 187
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 45

Conread position: 15-247
Cow position:
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 15-253
Cow position:
Alignm length: 242
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 21, 35

Conread position: 15-253
Cow position:
Alignm length: 242
Alignm identity: 180
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 22, 78

Conread position: 15-256
Cow position:
Alignm length: 247
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 86

Conread position: 15-275
Cow position:
Alignm length: 269
Alignm identity: 185
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 22, 80

Conread position: 16-251
Cow position:
Alignm length: 239
Alignm identity: 166
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 178

Conread position: 18-175
Cow position:
Alignm length: 160
Alignm identity: 133
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 44

Conread position: 18-250
Cow position:
Alignm length: 236
Alignm identity: 171
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 8, 173

Conread position: 18-253
Cow position:
Alignm length: 240
Alignm identity: 162
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 154

Conread position: 18-276
Cow position:
Alignm length: 264
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 242

Conread position: 28-249
Cow position:
Alignm length: 228
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 164

Conread position: 28-256
Cow position:
Alignm length: 233
Alignm identity: 178
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 0

Conread position: 29-256
Cow position:
Alignm length: 235
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 8, 161

Conread position: 47-216
Cow position:
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 140

Conread position: 48-256
Cow position:
Alignm length: 216
Alignm identity: 168
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 79, 142

Conread position: 52-256
Cow position:
Alignm length: 209
Alignm identity: 158
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 75, 148

Conread position: 74-256
Cow position:
Alignm length: 190
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 111

Conread position: 103-256
Cow position:
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 86

Conread position: 108-256
Cow position:
Alignm length: 156
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 81

Show alignments to all cow chromosomes.