Cow genome map

Conread name: rpliv0128_b16.y1

Conread position: 1-256
Cow position: chr19:12652403-12652139 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-272
Cow position: chr19:36351796-36351518 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 97

Conread position: 2-183
Cow position: chr19:30237235-30237054 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 59

Conread position: 2-186
Cow position: chr19:14528348-14528171 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 124, 35

Conread position: 2-189
Cow position: chr19:26518804-26518993 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 35, 0

Conread position: 2-216
Cow position: chr19:8273546-8273758 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 35, 188

Conread position: 2-253
Cow position: chr19:930346-930091 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 191

Conread position: 2-253
Cow position: chr19:1293877-1293622 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 2-253
Cow position: chr19:19389361-19389106 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 187

Conread position: 2-253
Cow position: chr19:20611861-20611606 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-253
Cow position: chr19:39339544-39339796 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 2-256
Cow position: chr19:6628-6376 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 34, 93

Conread position: 2-256
Cow position: chr19:41860-41602 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr19:176004-175737 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr19:405675-405416 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 191

Conread position: 2-256
Cow position: chr19:435809-436069 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 2-256
Cow position: chr19:444411-444666 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 35, 142

Conread position: 2-256
Cow position: chr19:1581382-1581640 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr19:2269774-2270032 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 2-256
Cow position: chr19:3086319-3086062 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 35, 89

Conread position: 2-256
Cow position: chr19:5733022-5732764 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 187

Conread position: 2-256
Cow position: chr19:5902554-5902296 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr19:7480416-7480665 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 109

Conread position: 2-256
Cow position: chr19:9118337-9118079 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:10195940-10195682 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:10613755-10613497 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:12209403-12209665 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr19:14157935-14157683 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:22512771-22512514 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 190

Conread position: 2-256
Cow position: chr19:24734664-24734412 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 35, 106

Conread position: 2-256
Cow position: chr19:29393869-29393611 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr19:30037380-30037638 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:31782097-31781840 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr19:33119197-33119455 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 189

Conread position: 2-256
Cow position: chr19:33528374-33528116 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:33876943-33876685 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:33945093-33944836 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr19:34905798-34906056 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:35781403-35781145 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr19:37844261-37844511 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 124

Conread position: 2-256
Cow position: chr19:39182013-39182271 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:40016065-40016318 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 211, 38

Conread position: 2-256
Cow position: chr19:40790831-40791087 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 26

Conread position: 2-256
Cow position: chr19:40848962-40849220 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr19:41204700-41204958 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr19:43149108-43148850 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:48626586-48626328 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr19:55164130-55164388 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-257
Cow position: chr19:5044170-5044414 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 35, 130

Conread position: 2-257
Cow position: chr19:28596903-28596644 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 187

Conread position: 2-269
Cow position: chr19:7078783-7078513 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 188

Conread position: 2-272
Cow position: chr19:28794804-28795075 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 211
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 37, 166

Conread position: 2-275
Cow position: chr19:27081888-27082167 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 174

Conread position: 2-296
Cow position: chr19:29367055-29366754 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 289

Conread position: 2-296
Cow position: chr19:29624563-29624262 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 289

Conread position: 3-179
Cow position: chr19:14180475-14180652 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 146
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 34, 102

Conread position: 3-256
Cow position: chr19:777038-776782 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 140

Conread position: 3-256
Cow position: chr19:799892-799646 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 40, 87

Conread position: 3-256
Cow position: chr19:2588708-2588458 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 59

Conread position: 3-256
Cow position: chr19:7472573-7472329 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 124, 34

Conread position: 3-256
Cow position: chr19:9704666-9704917 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 34, 139

Conread position: 3-256
Cow position: chr19:32952347-32952095 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 61

Conread position: 3-256
Cow position: chr19:39697010-39696759 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 184

Conread position: 3-256
Cow position: chr19:46821377-46821125 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 34, 49

Conread position: 3-260
Cow position: chr19:27347542-27347787 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 58

Conread position: 4-256
Cow position: chr19:39394726-39394470 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 8-257
Cow position: chr19:542103-542355 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 27, 87

Conread position: 8-272
Cow position: chr19:45464654-45464391 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 29, 55

Conread position: 9-251
Cow position: chr19:55843518-55843278 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 28, 89

Conread position: 9-256
Cow position: chr19:28450335-28450094 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 28, 58

Conread position: 11-256
Cow position: chr19:208018-207769 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 180

Conread position: 12-256
Cow position: chr19:743199-743433 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 25, 91

Conread position: 12-256
Cow position: chr19:35982286-35982040 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 73

Conread position: 12-265
Cow position: chr19:255610-255864 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 23, 66

Conread position: 14-256
Cow position: chr19:4389092-4388852 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 23, 10

Conread position: 14-256
Cow position: chr19:23488274-23488030 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 177

Conread position: 14-256
Cow position: chr19:48534243-48533997 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 191
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 22, 54

Conread position: 15-252
Cow position: chr19:3221625-3221379 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 80

Conread position: 16-256
Cow position: chr19:33593984-33594230 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 81

Conread position: 18-168
Cow position: chr19:32683076-32682925 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 79

Conread position: 19-256
Cow position: chr19:55378403-55378164 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 18, 188

Conread position: 20-256
Cow position: chr19:46873516-46873756 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 173

Conread position: 26-256
Cow position: chr19:22391720-22391486 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 11, 165

Conread position: 28-238
Cow position: chr19:27613003-27613216 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 99, 177

Conread position: 29-256
Cow position: chr19:5026692-5026923 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 8, 162

Conread position: 34-265
Cow position: chr19:267598-267367 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 131, 97

Conread position: 43-172
Cow position: chr19:33616275-33616145 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 113
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 52-253
Cow position: chr19:17883440-17883237 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 140, 155

Conread position: 53-252
Cow position: chr19:344853-344659 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 129

Conread position: 59-256
Cow position: chr19:33573251-33573448 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 67, 130

Conread position: 73-253
Cow position: chr19:730539-730719 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 53, 88

Conread position: 102-256
Cow position: chr19:1564370-1564527 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 88

Conread position: 105-256
Cow position: chr19:16478444-16478598 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 80

Show alignments to all cow chromosomes.