Cow genome map

Conread name: rpliv0128_b16.y1

Conread position: 1-183
Cow position: chr23:40553701-40553885 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 151
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 0

Conread position: 1-256
Cow position: chr23:14970533-14970789 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 60

Conread position: 1-256
Cow position: chr23:15180379-15180121 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 61

Conread position: 1-256
Cow position: chr23:31704316-31704057 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 190

Conread position: 2-187
Cow position: chr23:4266856-4266669 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 2-220
Cow position: chr23:29446529-29446744 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 132

Conread position: 2-235
Cow position: chr23:24098548-24098311 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 35, 0

Conread position: 2-249
Cow position: chr23:20152800-20153052 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 2-250
Cow position: chr23:28306265-28306010 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 35, 93

Conread position: 2-252
Cow position: chr23:11782206-11781951 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 191

Conread position: 2-252
Cow position: chr23:32007973-32008210 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 35, 80

Conread position: 2-253
Cow position: chr23:9193483-9193729 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 35, 83

Conread position: 2-256
Cow position: chr23:671592-671334 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr23:771071-771329 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr23:954380-954634 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 2-256
Cow position: chr23:1959547-1959289 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:2023664-2023922 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr23:2472880-2473138 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:2761318-2761061 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:2791353-2791600 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 35, 119

Conread position: 2-256
Cow position: chr23:3286179-3285921 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 89

Conread position: 2-256
Cow position: chr23:3302275-3302017 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 89

Conread position: 2-256
Cow position: chr23:4516953-4516703 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 119

Conread position: 2-256
Cow position: chr23:4532277-4532535 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr23:4636935-4637193 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 191

Conread position: 2-256
Cow position: chr23:4892116-4891858 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr23:5396159-5396418 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 2-256
Cow position: chr23:5441337-5441080 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 35, 187

Conread position: 2-256
Cow position: chr23:5624159-5624410 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 124

Conread position: 2-256
Cow position: chr23:8707811-8707553 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 192

Conread position: 2-256
Cow position: chr23:10424346-10424100 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 35, 56

Conread position: 2-256
Cow position: chr23:10679413-10679671 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr23:10936876-10937140 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 35, 195

Conread position: 2-256
Cow position: chr23:11070500-11070239 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 191

Conread position: 2-256
Cow position: chr23:11343917-11343659 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:11376897-11377155 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:14265763-14265509 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 119

Conread position: 2-256
Cow position: chr23:14959537-14959789 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 61

Conread position: 2-256
Cow position: chr23:15215417-15215672 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 170

Conread position: 2-256
Cow position: chr23:16495856-16496113 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 2-256
Cow position: chr23:17846411-17846160 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 60

Conread position: 2-256
Cow position: chr23:19493269-19493011 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr23:20389601-20389859 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 35, 91

Conread position: 2-256
Cow position: chr23:21772489-21772748 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr23:22143890-22144147 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr23:22170327-22170070 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 89

Conread position: 2-256
Cow position: chr23:24119975-24119717 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr23:25351780-25351522 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:26828669-26828415 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 119

Conread position: 2-256
Cow position: chr23:27402554-27402299 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 129

Conread position: 2-256
Cow position: chr23:28222122-28221863 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 181

Conread position: 2-256
Cow position: chr23:28915748-28915495 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 45

Conread position: 2-256
Cow position: chr23:29043204-29042945 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr23:30634174-30634432 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:31605848-31605590 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:36027832-36028090 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr23:37199090-37199351 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr23:38934814-38935052 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 35, 104

Conread position: 2-256
Cow position: chr23:39745280-39745026 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 33, 119

Conread position: 2-256
Cow position: chr23:40773748-40773492 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr23:41015349-41015091 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-265
Cow position: chr23:14215814-14216070 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 35, 89

Conread position: 2-265
Cow position: chr23:15529007-15528741 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 257

Conread position: 2-265
Cow position: chr23:27313265-27312999 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-270
Cow position: chr23:21351534-21351802 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 2-272
Cow position: chr23:4437038-4436769 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 238

Conread position: 2-276
Cow position: chr23:28987762-28987486 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 93

Conread position: 3-233
Cow position: chr23:8290873-8290646 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 188
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 34, 101

Conread position: 3-253
Cow position: chr23:36308623-36308378 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 47

Conread position: 3-256
Cow position: chr23:1398811-1399051 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 32, 51

Conread position: 3-256
Cow position: chr23:3549775-3550032 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 34, 188

Conread position: 3-256
Cow position: chr23:3877724-3877980 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 173

Conread position: 3-256
Cow position: chr23:25357765-25357508 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 0

Conread position: 3-263
Cow position: chr23:1325896-1326156 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 181

Conread position: 3-271
Cow position: chr23:11128437-11128169 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 55

Conread position: 4-252
Cow position: chr23:20025352-20025100 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 186

Conread position: 4-252
Cow position: chr23:31771850-31772100 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 0

Conread position: 4-253
Cow position: chr23:11078696-11078443 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 33, 78

Conread position: 4-256
Cow position: chr23:1010137-1010382 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 80

Conread position: 4-256
Cow position: chr23:11079803-11079546 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 190

Conread position: 4-256
Cow position: chr23:11712248-11712505 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 117

Conread position: 5-244
Cow position: chr23:40890188-40889949 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 121, 32

Conread position: 8-187
Cow position: chr23:20541382-20541209 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 59

Conread position: 8-256
Cow position: chr23:25554006-25553754 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 29, 158

Conread position: 8-302
Cow position: chr23:38584332-38584028 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 215
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 29, 53

Conread position: 9-253
Cow position: chr23:33817863-33817610 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 28, 0

Conread position: 9-256
Cow position: chr23:1338080-1338326 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 28, 122

Conread position: 14-256
Cow position: chr23:2408804-2409049 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 14-256
Cow position: chr23:3709810-3709567 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 187
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 23, 106

Conread position: 15-253
Cow position: chr23:19637494-19637726 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 130, 21

Conread position: 15-257
Cow position: chr23:34347282-34347035 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 24, 56

Conread position: 15-275
Cow position: chr23:16057104-16056841 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 76, 25

Conread position: 16-256
Cow position: chr23:5870999-5871234 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 21, 42

Conread position: 17-256
Cow position: chr23:5882708-5882469 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 20, 115

Conread position: 17-256
Cow position: chr23:38027544-38027785 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 160
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 40

Conread position: 17-265
Cow position: chr23:20170799-20171047 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 20, 143

Conread position: 24-252
Cow position: chr23:2369216-2368976 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 59

Conread position: 26-256
Cow position: chr23:3730189-3730423 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 11, 165

Conread position: 26-257
Cow position: chr23:29447854-29448087 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 161

Conread position: 59-256
Cow position: chr23:1048511-1048711 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 67, 131

Conread position: 68-253
Cow position: chr23:2720807-2720622 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 124, 48

Conread position: 70-256
Cow position: chr23:29935625-29935436 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 57, 9

Conread position: 73-256
Cow position: chr23:21008256-21008442 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 54, 117

Conread position: 84-256
Cow position: chr23:15567669-15567844 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 43, 106

Conread position: 93-256
Cow position: chr23:2737549-2737384 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 33, 67

Conread position: 102-256
Cow position: chr23:3417009-3417166 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 25, 88

Show alignments to all cow chromosomes.