Cow genome map

Conread name: rpliv0128_b16.y1

Conread position: 1-256
Cow position: chr25:29313110-29313367 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 36, 84

Conread position: 1-256
Cow position: chr25:29802534-29802793 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 2-183
Cow position: chr25:34013544-34013726 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 146
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 35, 0

Conread position: 2-239
Cow position: chr25:35446155-35445920 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 34, 125

Conread position: 2-253
Cow position: chr25:19367488-19367740 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 35, 56

Conread position: 2-253
Cow position: chr25:41097988-41098236 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 36, 105

Conread position: 2-253
Cow position: chr25:41385888-41386133 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 33, 102

Conread position: 2-254
Cow position: chr25:29357802-29358058 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr25:7223222-7223480 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr25:8655501-8655242 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 50

Conread position: 2-256
Cow position: chr25:11124976-11124718 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr25:13787184-13786926 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr25:13960272-13960019 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 79

Conread position: 2-256
Cow position: chr25:14756201-14756457 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 171

Conread position: 2-256
Cow position: chr25:17554052-17554306 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 35, 19

Conread position: 2-256
Cow position: chr25:17904850-17904592 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr25:18190168-18190420 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 66

Conread position: 2-256
Cow position: chr25:18330565-18330824 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 36, 190

Conread position: 2-256
Cow position: chr25:19139362-19139620 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr25:19337117-19337373 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 48

Conread position: 2-256
Cow position: chr25:19923731-19923479 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 130

Conread position: 2-256
Cow position: chr25:24654964-24655217 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 172

Conread position: 2-256
Cow position: chr25:26282234-26281977 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 114

Conread position: 2-256
Cow position: chr25:26353576-26353832 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 24

Conread position: 2-256
Cow position: chr25:26705672-26705930 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr25:26780876-26781130 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 191

Conread position: 2-256
Cow position: chr25:26896256-26896004 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 42, 23

Conread position: 2-256
Cow position: chr25:27019028-27019285 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 0

Conread position: 2-256
Cow position: chr25:28863082-28862824 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr25:32577452-32577710 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr25:32610210-32610468 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr25:34164352-34164609 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 114

Conread position: 2-256
Cow position: chr25:34508972-34509227 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 35, 48

Conread position: 2-256
Cow position: chr25:35372403-35372661 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr25:35553878-35553622 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 190

Conread position: 2-256
Cow position: chr25:35567676-35567931 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 114

Conread position: 2-256
Cow position: chr25:35589287-35589030 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 187

Conread position: 2-256
Cow position: chr25:36350948-36350692 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr25:39386619-39386877 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-257
Cow position: chr25:12938997-12939256 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 191

Conread position: 2-258
Cow position: chr25:17992937-17993191 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 35, 125

Conread position: 2-265
Cow position: chr25:17585812-17586076 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 191

Conread position: 2-265
Cow position: chr25:26850007-26850271 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 35, 83

Conread position: 2-265
Cow position: chr25:31073386-31073652 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-265
Cow position: chr25:41121214-41120953 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-268
Cow position: chr25:16801650-16801392 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 191

Conread position: 2-270
Cow position: chr25:26914440-26914173 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 73

Conread position: 2-270
Cow position: chr25:34343698-34343966 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 60

Conread position: 2-271
Cow position: chr25:20075687-20075418 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 35, 131

Conread position: 2-272
Cow position: chr25:18072435-18072158 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-272
Cow position: chr25:20633970-20633694 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 99

Conread position: 2-272
Cow position: chr25:28275458-28275732 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 2-275
Cow position: chr25:29525657-29525937 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-304
Cow position: chr25:17995080-17995390 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 3-239
Cow position: chr25:23366876-23366636 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 192

Conread position: 3-247
Cow position: chr25:2507479-2507233 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 131, 186

Conread position: 3-249
Cow position: chr25:16922582-16922830 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 72

Conread position: 3-253
Cow position: chr25:41356588-41356842 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 192

Conread position: 3-256
Cow position: chr25:6955277-6955020 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 0

Conread position: 3-256
Cow position: chr25:10137022-10136776 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 128

Conread position: 3-256
Cow position: chr25:11956040-11955783 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 187

Conread position: 3-256
Cow position: chr25:18486668-18486418 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 142

Conread position: 3-256
Cow position: chr25:23394074-23393824 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 63

Conread position: 3-256
Cow position: chr25:26931305-26931048 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 3-256
Cow position: chr25:33687998-33688266 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 34, 0

Conread position: 3-256
Cow position: chr25:35755035-35755291 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 92

Conread position: 3-256
Cow position: chr25:41135539-41135791 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 93

Conread position: 3-257
Cow position: chr25:17657828-17657572 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 63

Conread position: 3-257
Cow position: chr25:23325819-23326075 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 123, 28

Conread position: 3-265
Cow position: chr25:4522602-4522868 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 34, 190

Conread position: 3-265
Cow position: chr25:25826659-25826392 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 34, 60

Conread position: 3-270
Cow position: chr25:37648626-37648370 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 25

Conread position: 3-294
Cow position: chr25:33574529-33574819 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 124

Conread position: 4-256
Cow position: chr25:22151313-22151057 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 4-270
Cow position: chr25:18269685-18269412 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 33, 93

Conread position: 6-183
Cow position: chr25:41364761-41364939 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 20, 39

Conread position: 8-256
Cow position: chr25:13429908-13430157 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 18, 185

Conread position: 8-256
Cow position: chr25:20772130-20772374 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 182

Conread position: 8-256
Cow position: chr25:34503018-34503270 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 183

Conread position: 8-265
Cow position: chr25:23361689-23361434 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 29, 55

Conread position: 9-233
Cow position: chr25:24228134-24228360 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 18, 151

Conread position: 9-252
Cow position: chr25:27231562-27231315 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 177

Conread position: 9-256
Cow position: chr25:11043822-11043573 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 9-256
Cow position: chr25:11665866-11665628 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 27, 73

Conread position: 9-256
Cow position: chr25:25480403-25480646 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 28, 90

Conread position: 9-256
Cow position: chr25:33838579-33838335 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 27, 32

Conread position: 9-257
Cow position: chr25:9395612-9395366 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 28, 142

Conread position: 9-257
Cow position: chr25:12082148-12082394 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 27, 112

Conread position: 9-270
Cow position: chr25:18490268-18490001 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 81

Conread position: 9-274
Cow position: chr25:10633806-10634071 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 47, 146

Conread position: 10-256
Cow position: chr25:40322088-40322338 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 164

Conread position: 14-256
Cow position: chr25:18886283-18886529 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 15-252
Cow position: chr25:10012865-10013105 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 22, 137

Conread position: 15-257
Cow position: chr25:23998992-23999232 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 21, 134

Conread position: 18-253
Cow position: chr25:13941540-13941783 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 183

Conread position: 18-253
Cow position: chr25:37593596-37593357 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 20, 40

Conread position: 18-256
Cow position: chr25:24303073-24303313 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 44

Conread position: 19-256
Cow position: chr25:25039443-25039217 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 18, 102

Conread position: 28-272
Cow position: chr25:4372511-4372751 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 185, 39

Conread position: 54-256
Cow position: chr25:11896774-11896570 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 72, 29

Conread position: 59-256
Cow position: chr25:35571971-35571771 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 68, 131

Conread position: 63-265
Cow position: chr25:3172252-3172455 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 88

Conread position: 65-190
Cow position: chr25:26518432-26518307 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 104

Conread position: 81-256
Cow position: chr25:27076021-27076199 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 46, 107

Conread position: 92-256
Cow position: chr25:21949917-21949750 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 35, 98

Show alignments to all cow chromosomes.