Cow genome map

Conread name: rpliv0128_b16.y1

Conread position: 1-256
Cow position: chr26:6038227-6038474 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 36, 174

Conread position: 1-256
Cow position: chr26:8885310-8885052 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-256
Cow position: chr26:17429008-17429267 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 190

Conread position: 1-256
Cow position: chr26:35560594-35560853 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 190

Conread position: 1-270
Cow position: chr26:3564572-3564848 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 190

Conread position: 2-183
Cow position: chr26:30725451-30725635 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 2-186
Cow position: chr26:30786393-30786207 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 35, 0

Conread position: 2-187
Cow position: chr26:2670354-2670538 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 35, 128

Conread position: 2-210
Cow position: chr26:17169296-17169090 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 35, 188

Conread position: 2-210
Cow position: chr26:29433698-29433492 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 35, 188

Conread position: 2-239
Cow position: chr26:18877272-18877032 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 35, 76

Conread position: 2-248
Cow position: chr26:20019567-20019317 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-250
Cow position: chr26:26286326-26286073 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 189

Conread position: 2-252
Cow position: chr26:6843754-6844008 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 187

Conread position: 2-252
Cow position: chr26:17327631-17327374 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 190

Conread position: 2-253
Cow position: chr26:3230932-3230679 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 35, 59

Conread position: 2-253
Cow position: chr26:3755479-3755232 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 125, 34

Conread position: 2-253
Cow position: chr26:17393433-17393684 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 46, 127

Conread position: 2-256
Cow position: chr26:387146-386888 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr26:1088643-1088392 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 194
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 35, 51

Conread position: 2-256
Cow position: chr26:1342829-1343087 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:1346528-1346786 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr26:1621113-1620863 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 35, 49

Conread position: 2-256
Cow position: chr26:2201994-2201738 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 135

Conread position: 2-256
Cow position: chr26:3157581-3157323 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr26:3199837-3199579 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:3537588-3537330 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:3833500-3833242 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 194
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:3862613-3862870 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 35, 88

Conread position: 2-256
Cow position: chr26:4440300-4440546 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 168

Conread position: 2-256
Cow position: chr26:4728859-4729116 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 93

Conread position: 2-256
Cow position: chr26:5679998-5679738 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr26:6430049-6429794 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 48

Conread position: 2-256
Cow position: chr26:7459496-7459756 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 35, 112

Conread position: 2-256
Cow position: chr26:7559150-7559408 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:8084292-8084034 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:8738951-8739209 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr26:9070028-9069769 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr26:9558414-9558672 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 138

Conread position: 2-256
Cow position: chr26:9694330-9694588 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr26:12585072-12585330 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr26:13806563-13806819 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 21

Conread position: 2-256
Cow position: chr26:14487795-14488047 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 119

Conread position: 2-256
Cow position: chr26:15145960-15145702 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:18803903-18804162 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 190

Conread position: 2-256
Cow position: chr26:18857581-18857328 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 35, 73

Conread position: 2-256
Cow position: chr26:18928741-18928490 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 36, 144

Conread position: 2-256
Cow position: chr26:22691852-22691598 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 32

Conread position: 2-256
Cow position: chr26:22831573-22831828 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 20

Conread position: 2-256
Cow position: chr26:23889876-23889620 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 59

Conread position: 2-256
Cow position: chr26:30594163-30594421 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:31138486-31138738 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 155, 7

Conread position: 2-256
Cow position: chr26:34265430-34265172 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 2-256
Cow position: chr26:35121776-35122034 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-256
Cow position: chr26:35191082-35191339 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 2-256
Cow position: chr26:35423963-35423707 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 151

Conread position: 2-261
Cow position: chr26:11370158-11369900 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 33, 24

Conread position: 2-265
Cow position: chr26:15199493-15199228 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 190

Conread position: 2-265
Cow position: chr26:23591161-23590895 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 192

Conread position: 2-270
Cow position: chr26:1390448-1390173 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 2-270
Cow position: chr26:9115504-9115231 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 187

Conread position: 2-270
Cow position: chr26:13183776-13183503 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 3-252
Cow position: chr26:17182526-17182295 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 34, 54

Conread position: 3-254
Cow position: chr26:34015302-34015052 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 37, 139

Conread position: 3-256
Cow position: chr26:1885475-1885220 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 34, 54

Conread position: 3-256
Cow position: chr26:8308288-8308554 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 33

Conread position: 3-256
Cow position: chr26:20256088-20255837 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 3-256
Cow position: chr26:20496995-20496744 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 128

Conread position: 3-265
Cow position: chr26:21012582-21012320 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 176
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 124, 71

Conread position: 3-272
Cow position: chr26:4324256-4324525 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 32, 40

Conread position: 4-253
Cow position: chr26:3556653-3556888 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 39, 52

Conread position: 4-256
Cow position: chr26:46187-46442 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 54

Conread position: 4-256
Cow position: chr26:1915804-1915550 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 33, 0

Conread position: 4-256
Cow position: chr26:24239163-24238914 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 142

Conread position: 6-253
Cow position: chr26:9100532-9100769 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 31, 93

Conread position: 8-253
Cow position: chr26:27987140-27987379 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 55

Conread position: 8-256
Cow position: chr26:13773511-13773261 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 228

Conread position: 8-256
Cow position: chr26:18800704-18800951 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 88

Conread position: 14-238
Cow position: chr26:20218700-20218481 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 76

Conread position: 15-252
Cow position: chr26:26238452-26238214 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 21, 150

Conread position: 17-256
Cow position: chr26:783804-784054 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 17-256
Cow position: chr26:9063535-9063296 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 211

Conread position: 18-256
Cow position: chr26:3700409-3700179 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 19, 38

Conread position: 18-256
Cow position: chr26:9840947-9841190 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 19, 111

Conread position: 18-265
Cow position: chr26:11269671-11269429 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 20, 174

Conread position: 43-256
Cow position: chr26:3722868-3722658 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 169, 83

Conread position: 47-256
Cow position: chr26:10011541-10011330 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 147, 0

Conread position: 47-256
Cow position: chr26:14291211-14291010 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 162, 73

Conread position: 51-271
Cow position: chr26:3689915-3689688 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 68, 146

Conread position: 83-256
Cow position: chr26:1637376-1637549 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 129, 52

Conread position: 84-256
Cow position: chr26:14897388-14897209 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 110

Conread position: 85-265
Cow position: chr26:756231-756410 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 41, 70

Conread position: 104-256
Cow position: chr26:2348808-2348963 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 86

Conread position: 106-265
Cow position: chr26:7506352-7506513 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 86

Show alignments to all cow chromosomes.