Cow genome map
| Conread name: | rpliv0128_b16.y1 |
| Conread position: | 1-256 |
| Cow position: | chr27:26330354-26330095 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 185 |
| Conread position: | 1-257 |
| Cow position: | chr27:165498-165757 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 1-265 |
| Cow position: | chr27:3232112-3232379 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 2-183 |
| Cow position: | chr27:12239488-12239306 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 2-186 |
| Cow position: | chr27:17476785-17476972 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-187 |
| Cow position: | chr27:3649902-3649715 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 2-252 |
| Cow position: | chr27:344509-344756 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 184 |
| Conread position: | 2-253 |
| Cow position: | chr27:14380724-14380470 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 2-253 |
| Cow position: | chr27:25799679-25799423 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 2-253 |
| Cow position: | chr27:29035961-29036214 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 156 |
| Conread position: | 2-253 |
| Cow position: | chr27:29467349-29467097 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 2-256 |
| Cow position: | chr27:1081742-1081999 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 2-256 |
| Cow position: | chr27:1521095-1520843 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 2-256 |
| Cow position: | chr27:3653279-3653537 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 187 |
| Conread position: | 2-256 |
| Cow position: | chr27:4982793-4982535 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 2-256 |
| Cow position: | chr27:5983609-5983867 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 188 |
| Conread position: | 2-256 |
| Cow position: | chr27:5990624-5990883 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 35, 196 |
| Conread position: | 2-256 |
| Cow position: | chr27:8201356-8201101 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 185 |
| Conread position: | 2-256 |
| Cow position: | chr27:8427271-8427020 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 124, 22 |
| Conread position: | 2-256 |
| Cow position: | chr27:8972865-8972607 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 186 |
| Conread position: | 2-256 |
| Cow position: | chr27:9333088-9332841 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 35, 119 |
| Conread position: | 2-256 |
| Cow position: | chr27:9970592-9970334 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 2-256 |
| Cow position: | chr27:10383852-10383611 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 2-256 |
| Cow position: | chr27:10579368-10579110 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 2-256 |
| Cow position: | chr27:11434588-11434338 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 2-256 |
| Cow position: | chr27:11481352-11481094 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 184 |
| Conread position: | 2-256 |
| Cow position: | chr27:12006569-12006311 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 2-256 |
| Cow position: | chr27:13309065-13308807 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 189 |
| Conread position: | 2-256 |
| Cow position: | chr27:13901545-13901287 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 189 |
| Conread position: | 2-256 |
| Cow position: | chr27:15033470-15033728 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 184 |
| Conread position: | 2-256 |
| Cow position: | chr27:15633922-15634179 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 99 |
| Conread position: | 2-256 |
| Cow position: | chr27:16030976-16031234 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 2-256 |
| Cow position: | chr27:19423956-19424214 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 191 |
| Conread position: | 2-256 |
| Cow position: | chr27:19523288-19523545 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 175 |
| Conread position: | 2-256 |
| Cow position: | chr27:19932135-19932403 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 2-256 |
| Cow position: | chr27:22647211-22647469 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 2-256 |
| Cow position: | chr27:22797238-22797494 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 174 |
| Conread position: | 2-256 |
| Cow position: | chr27:24295839-24296106 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 35, 198 |
| Conread position: | 2-256 |
| Cow position: | chr27:25800790-25801042 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 2-256 |
| Cow position: | chr27:30306848-30307106 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 2-258 |
| Cow position: | chr27:15866882-15867134 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 2-265 |
| Cow position: | chr27:14297628-14297362 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 189 |
| Conread position: | 2-265 |
| Cow position: | chr27:20810837-20810576 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 172 |
| Conread position: | 2-272 |
| Cow position: | chr27:30036292-30036015 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 190 |
| Conread position: | 2-274 |
| Cow position: | chr27:2557572-2557845 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 119 |
| Conread position: | 2-279 |
| Cow position: | chr27:27045595-27045317 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 2-295 |
| Cow position: | chr27:1189083-1188784 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 35, 125 |
| Conread position: | 3-184 |
| Cow position: | chr27:24205714-24205897 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-190 |
| Cow position: | chr27:10306537-10306349 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 3-252 |
| Cow position: | chr27:21451863-21451611 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-256 |
| Cow position: | chr27:1501933-1501688 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 34, 55 |
| Conread position: | 3-256 |
| Cow position: | chr27:2681940-2681686 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 189 |
| Conread position: | 3-256 |
| Cow position: | chr27:8291261-8291006 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 192 |
| Conread position: | 3-256 |
| Cow position: | chr27:13353726-13353469 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 187 |
| Conread position: | 3-256 |
| Cow position: | chr27:15272656-15272905 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 3-256 |
| Cow position: | chr27:15349075-15348825 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 3-256 |
| Cow position: | chr27:26785237-26784985 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 3-256 |
| Cow position: | chr27:27729071-27729324 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 3-256 |
| Cow position: | chr27:27930616-27930371 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 3-259 |
| Cow position: | chr27:21350267-21350010 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 155 |
| Conread position: | 3-272 |
| Cow position: | chr27:16787878-16788153 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 188 |
| Conread position: | 4-256 |
| Cow position: | chr27:2331922-2331666 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 5-186 |
| Cow position: | chr27:16332061-16332243 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 8-253 |
| Cow position: | chr27:15697758-15697516 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 8-256 |
| Cow position: | chr27:15870605-15870847 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 8-256 |
| Cow position: | chr27:27291808-27291552 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 185 |
| Conread position: | 9-256 |
| Cow position: | chr27:1536583-1536333 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 28, 187 |
| Conread position: | 9-256 |
| Cow position: | chr27:21392424-21392175 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 9-274 |
| Cow position: | chr27:27279128-27278859 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 13-256 |
| Cow position: | chr27:27557212-27556969 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 14-256 |
| Cow position: | chr27:4331327-4331577 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 181 |
| Conread position: | 14-256 |
| Cow position: | chr27:26551983-26552220 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 129 |
| Conread position: | 14-257 |
| Cow position: | chr27:5925671-5925435 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 15-251 |
| Cow position: | chr27:25971192-25971433 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 15-256 |
| Cow position: | chr27:8429419-8429166 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 18-253 |
| Cow position: | chr27:31268615-31268382 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 18-256 |
| Cow position: | chr27:13316964-13316726 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 175 |
| Conread position: | 23-270 |
| Cow position: | chr27:20765140-20764894 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 186, 13 |
| Conread position: | 26-256 |
| Cow position: | chr27:5914328-5914096 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 46-249 |
| Cow position: | chr27:24055082-24054880 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 63-273 |
| Cow position: | chr27:9989843-9990060 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 126 |
| Conread position: | 74-252 |
| Cow position: | chr27:8262116-8261937 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 74-272 |
| Cow position: | chr27:25885174-25884969 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 86-256 |
| Cow position: | chr27:15544351-15544178 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 103 |
Show alignments to all cow chromosomes.