Cow genome map
| Conread name: | rplun0138_k1.y1 |
| Conread position: | 1-125 |
| Cow position: | chr10:30685048-30685169 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-127 |
| Cow position: | chr10:8339863-8339737 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 1-129 |
| Cow position: | chr10:25359866-25359740 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-133 |
| Cow position: | chr10:124777-124644 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 32 |
| Conread position: | 1-134 |
| Cow position: | chr10:54978787-54978918 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 117, 14 |
| Conread position: | 1-139 |
| Cow position: | chr10:7281628-7281763 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-139 |
| Cow position: | chr10:16925997-16925866 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr10:21487382-21487246 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-139 |
| Cow position: | chr10:38344894-38345031 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 1-139 |
| Cow position: | chr10:38538037-38538174 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr10:39040836-39040971 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-139 |
| Cow position: | chr10:57989527-57989663 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-139 |
| Cow position: | chr10:62408384-62408520 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr10:19512071-19511932 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr10:29846185-29846326 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-143 |
| Cow position: | chr10:21400211-21400353 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-149 |
| Cow position: | chr10:17432790-17432946 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 33 |
| Conread position: | 1-200 |
| Cow position: | chr10:44294453-44294645 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 138, 16 |
| Conread position: | 1-206 |
| Cow position: | chr10:8326833-8327034 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 1-215 |
| Cow position: | chr10:31524562-31524350 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-216 |
| Cow position: | chr10:3542759-3542983 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 1-216 |
| Cow position: | chr10:28930925-28931151 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 117, 31 |
| Conread position: | 1-217 |
| Cow position: | chr10:14861725-14861493 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 106, 36 |
| Conread position: | 1-507 |
| Cow position: | chr10:38848179-38847635 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 24 |
| Conread position: | 2-139 |
| Cow position: | chr10:32651198-32651064 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 27 |
| Conread position: | 2-143 |
| Cow position: | chr10:41157906-41157765 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 128, 32 |
| Conread position: | 3-141 |
| Cow position: | chr10:34686364-34686226 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 4-133 |
| Cow position: | chr10:62217072-62216941 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 4-147 |
| Cow position: | chr10:46693929-46694075 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 12-504 |
| Cow position: | chr10:46192155-46191652 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 17-180 |
| Cow position: | chr10:42110785-42110609 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 71-216 |
| Cow position: | chr10:33347409-33347262 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 211-320 |
| Cow position: | chr10:15860703-15860819 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 218-492 |
| Cow position: | chr10:21900636-21900910 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 242-509 |
| Cow position: | chr10:22843315-22843038 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 243-505 |
| Cow position: | chr10:60490154-60489887 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 124 |
| Conread position: | 243-509 |
| Cow position: | chr10:3543047-3543298 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 243-509 |
| Cow position: | chr10:8327714-8327981 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 243-509 |
| Cow position: | chr10:28931251-28931525 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 243-509 |
| Cow position: | chr10:33347162-33346890 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 137 |
| Conread position: | 281-464 |
| Cow position: | chr10:37107568-37107384 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 165, 55 |
| Conread position: | 281-481 |
| Cow position: | chr10:41351241-41351436 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 281-509 |
| Cow position: | chr10:20371464-20371688 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 156, 58 |
| Conread position: | 281-509 |
| Cow position: | chr10:24298340-24298570 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 322-509 |
| Cow position: | chr10:15861654-15861849 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 343-509 |
| Cow position: | chr10:49310945-49310776 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 366-509 |
| Cow position: | chr10:8339330-8339186 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 366-509 |
| Cow position: | chr10:42629058-42628913 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 370-505 |
| Cow position: | chr10:54979041-54979177 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 58 |
| Conread position: | 373-509 |
| Cow position: | chr10:31524226-31524088 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 62 |
Show alignments to all cow chromosomes.