Cow genome map
| Conread name: | rplun0138_k1.y1 |
| Conread position: | 1-129 |
| Cow position: | chr15:21665698-21665824 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-133 |
| Cow position: | chr15:8750474-8750341 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-133 |
| Cow position: | chr15:17292486-17292353 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 115, 29 |
| Conread position: | 1-139 |
| Cow position: | chr15:2076696-2076560 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 1-139 |
| Cow position: | chr15:4385315-4385180 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-139 |
| Cow position: | chr15:4682278-4682140 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 1-139 |
| Cow position: | chr15:7260677-7260539 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 1-139 |
| Cow position: | chr15:18576762-18576626 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr15:31358934-31358798 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 1-139 |
| Cow position: | chr15:37392538-37392400 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 1-140 |
| Cow position: | chr15:4922198-4922058 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr15:6155901-6156046 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 1-140 |
| Cow position: | chr15:7837292-7837151 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr15:8099536-8099395 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-140 |
| Cow position: | chr15:12421118-12421258 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 1-140 |
| Cow position: | chr15:15347071-15347212 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr15:18332780-18332921 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr15:32494339-32494479 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-144 |
| Cow position: | chr15:42936760-42936616 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 1-146 |
| Cow position: | chr15:32673501-32673643 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-151 |
| Cow position: | chr15:524813-524963 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 1-160 |
| Cow position: | chr15:19738005-19738164 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 140, 33 |
| Conread position: | 1-160 |
| Cow position: | chr15:35753549-35753709 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 116, 32 |
| Conread position: | 1-162 |
| Cow position: | chr15:1764137-1763977 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 116, 22 |
| Conread position: | 1-196 |
| Cow position: | chr15:35735621-35735414 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-209 |
| Cow position: | chr15:51715005-51714786 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 90, 38 |
| Conread position: | 1-216 |
| Cow position: | chr15:9429988-9429773 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 1-216 |
| Cow position: | chr15:16508045-16507812 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 102, 33 |
| Conread position: | 1-216 |
| Cow position: | chr15:36626247-36626445 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 1-217 |
| Cow position: | chr15:24794397-24794190 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-508 |
| Cow position: | chr15:1237730-1237191 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 23 |
| Conread position: | 2-214 |
| Cow position: | chr15:21449746-21449524 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 101, 30 |
| Conread position: | 3-140 |
| Cow position: | chr15:51216634-51216496 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 31 |
| Conread position: | 3-155 |
| Cow position: | chr15:24295140-24294994 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 31 |
| Conread position: | 3-214 |
| Cow position: | chr15:40105917-40105696 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 116, 31 |
| Conread position: | 4-133 |
| Cow position: | chr15:10787082-10787213 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 4-133 |
| Cow position: | chr15:17271352-17271481 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 11 |
| Conread position: | 4-133 |
| Cow position: | chr15:36648955-36648823 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 4-141 |
| Cow position: | chr15:38195534-38195394 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 4-161 |
| Cow position: | chr15:23156795-23156954 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 6-136 |
| Cow position: | chr15:328470-328339 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 113, 28 |
| Conread position: | 8-216 |
| Cow position: | chr15:24716905-24716701 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 12-124 |
| Cow position: | chr15:4961683-4961571 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 105, 22 |
| Conread position: | 14-216 |
| Cow position: | chr15:36642974-36642755 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 32-216 |
| Cow position: | chr15:686931-686745 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 66-216 |
| Cow position: | chr15:35647922-35648087 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 148 |
| Conread position: | 243-416 |
| Cow position: | chr15:51802073-51801892 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 243-507 |
| Cow position: | chr15:15265525-15265787 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 243-508 |
| Cow position: | chr15:686663-686397 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 243-509 |
| Cow position: | chr15:36626530-36626799 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 148 |
| Conread position: | 245-509 |
| Cow position: | chr15:12615211-12614934 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 247-506 |
| Cow position: | chr15:21449454-21449183 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 281-506 |
| Cow position: | chr15:16507684-16507454 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 281-509 |
| Cow position: | chr15:325042-324807 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 282-431 |
| Cow position: | chr15:36268744-36268893 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-497 |
| Cow position: | chr15:11624997-11624791 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 292-509 |
| Cow position: | chr15:9429628-9429411 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 154, 98 |
| Conread position: | 301-509 |
| Cow position: | chr15:40105545-40105334 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 165 |
| Conread position: | 305-508 |
| Cow position: | chr15:2007613-2007406 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 319-497 |
| Cow position: | chr15:3842758-3842938 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 366-506 |
| Cow position: | chr15:35648224-35648361 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 107 |
| Conread position: | 366-509 |
| Cow position: | chr15:36642627-36642486 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 409-509 |
| Cow position: | chr15:51801673-51801570 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.