Cow genome map
| Conread name: | rplun0138_k1.y1 |
| Conread position: | 1-129 |
| Cow position: | chr16:25085342-25085217 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-134 |
| Cow position: | chr16:43897570-43897701 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 1-135 |
| Cow position: | chr16:15184504-15184372 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr16:5484020-5483888 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr16:10437942-10437806 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr16:12538225-12538360 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr16:23983011-23982875 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr16:40296477-40296613 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:407331-407471 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:1431858-1431718 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:1567753-1567894 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:2727587-2727728 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:8816405-8816544 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 126, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:15566441-15566302 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-140 |
| Cow position: | chr16:23252805-23252947 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:25441325-25441184 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:25457764-25457905 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr16:26663452-26663309 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 1-140 |
| Cow position: | chr16:27734091-27734232 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-140 |
| Cow position: | chr16:28471402-28471542 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 28 |
| Conread position: | 1-141 |
| Cow position: | chr16:2239039-2239181 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 1-141 |
| Cow position: | chr16:34530022-34529880 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 1-142 |
| Cow position: | chr16:9930635-9930494 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-143 |
| Cow position: | chr16:31832326-31832184 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-155 |
| Cow position: | chr16:2411267-2411414 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-160 |
| Cow position: | chr16:25341667-25341507 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 118, 89 |
| Conread position: | 1-214 |
| Cow position: | chr16:47473271-47473062 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-218 |
| Cow position: | chr16:23808122-23807904 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 1-509 |
| Cow position: | chr16:25257637-25257128 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 2-208 |
| Cow position: | chr16:18763921-18764134 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 91, 32 |
| Conread position: | 2-216 |
| Cow position: | chr16:5890212-5890001 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 28 |
| Conread position: | 3-133 |
| Cow position: | chr16:2483442-2483574 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 31 |
| Conread position: | 4-133 |
| Cow position: | chr16:14430292-14430162 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 4-133 |
| Cow position: | chr16:20254612-20254743 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 4-509 |
| Cow position: | chr16:25156180-25156699 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 350 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 11-201 |
| Cow position: | chr16:49235142-49235331 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 26-216 |
| Cow position: | chr16:29033723-29033522 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 100, 8 |
| Conread position: | 35-216 |
| Cow position: | chr16:49256456-49256641 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 74-506 |
| Cow position: | chr16:5652716-5652291 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 243-457 |
| Cow position: | chr16:25154182-25153959 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 243-505 |
| Cow position: | chr16:9930334-9930066 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 243-509 |
| Cow position: | chr16:32935968-32935698 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 231 |
| Conread position: | 257-465 |
| Cow position: | chr16:44966936-44966729 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 189, 159 |
| Conread position: | 281-508 |
| Cow position: | chr16:5889669-5889444 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 164, 67 |
| Conread position: | 281-509 |
| Cow position: | chr16:46582771-46582985 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 139, 61 |
| Conread position: | 312-509 |
| Cow position: | chr16:31375558-31375758 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 318-509 |
| Cow position: | chr16:52814781-52814967 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 366-508 |
| Cow position: | chr16:23807638-23807498 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 366-508 |
| Cow position: | chr16:42739753-42739899 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 6, 111 |
| Conread position: | 366-509 |
| Cow position: | chr16:16273165-16273311 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 366-509 |
| Cow position: | chr16:49235480-49235627 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 372-509 |
| Cow position: | chr16:49256919-49257059 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 373-509 |
| Cow position: | chr16:29033378-29033241 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 44 |
Show alignments to all cow chromosomes.