Cow genome map
| Conread name: | rplun0138_k1.y1 |
| Conread position: | 1-133 |
| Cow position: | chr17:24029721-24029854 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-134 |
| Cow position: | chr17:13856492-13856626 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 1-139 |
| Cow position: | chr17:14894432-14894296 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr17:40805096-40804960 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-140 |
| Cow position: | chr17:3642558-3642698 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 1-140 |
| Cow position: | chr17:11087446-11087586 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-140 |
| Cow position: | chr17:15850676-15850535 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr17:18103408-18103547 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 1-140 |
| Cow position: | chr17:19269089-19269228 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr17:25737941-25737801 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-160 |
| Cow position: | chr17:6260121-6259964 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-216 |
| Cow position: | chr17:12669798-12670023 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 118, 36 |
| Conread position: | 1-216 |
| Cow position: | chr17:18300117-18300347 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 1-216 |
| Cow position: | chr17:19019850-19019626 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 2-139 |
| Cow position: | chr17:2579892-2579758 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-161 |
| Cow position: | chr17:35592494-35592333 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 111, 31 |
| Conread position: | 4-134 |
| Cow position: | chr17:602163-602295 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 4-139 |
| Cow position: | chr17:20072969-20073103 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 5-133 |
| Cow position: | chr17:22132504-22132374 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 8-140 |
| Cow position: | chr17:27346071-27345936 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 76-216 |
| Cow position: | chr17:20402277-20402137 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 214-508 |
| Cow position: | chr17:42264916-42264604 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 157 |
| Conread position: | 242-509 |
| Cow position: | chr17:4082013-4081730 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 243-437 |
| Cow position: | chr17:152136-152336 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 243-449 |
| Cow position: | chr17:22557955-22557764 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 243-465 |
| Cow position: | chr17:18300447-18300667 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 243-509 |
| Cow position: | chr17:4295715-4295446 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 243-509 |
| Cow position: | chr17:20402034-20401763 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 147 |
| Conread position: | 245-505 |
| Cow position: | chr17:18193548-18193292 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 88 |
| Conread position: | 276-509 |
| Cow position: | chr17:6001688-6001916 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 76, 116 |
| Conread position: | 281-509 |
| Cow position: | chr17:1658241-1658464 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 157, 88 |
| Conread position: | 281-509 |
| Cow position: | chr17:4672758-4672535 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 175, 61 |
| Conread position: | 282-505 |
| Cow position: | chr17:12670168-12670385 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 143, 40 |
| Conread position: | 366-505 |
| Cow position: | chr17:15371295-15371153 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 367-509 |
| Cow position: | chr17:14325267-14325411 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.