Cow genome map
| Conread name: | rplun0138_k1.y1 |
| Conread position: | 1-125 |
| Cow position: | chr2:10268727-10268850 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-133 |
| Cow position: | chr2:4926243-4926376 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-133 |
| Cow position: | chr2:5870426-5870556 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-133 |
| Cow position: | chr2:24146792-24146659 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 1-133 |
| Cow position: | chr2:44991364-44991496 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-133 |
| Cow position: | chr2:65938519-65938650 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 1-133 |
| Cow position: | chr2:81256737-81256605 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-134 |
| Cow position: | chr2:5904931-5905066 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 1-137 |
| Cow position: | chr2:69584693-69584834 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 1-139 |
| Cow position: | chr2:10186302-10186436 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-139 |
| Cow position: | chr2:11159194-11159330 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-139 |
| Cow position: | chr2:12224381-12224517 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr2:13045773-13045909 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr2:50077532-50077393 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 32 |
| Conread position: | 1-140 |
| Cow position: | chr2:8118469-8118328 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr2:16900182-16900041 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr2:28650301-28650439 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 1-140 |
| Cow position: | chr2:50983296-50983437 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-141 |
| Cow position: | chr2:175600-175737 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-141 |
| Cow position: | chr2:198859-198996 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-143 |
| Cow position: | chr2:39421505-39421363 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-155 |
| Cow position: | chr2:28793185-28793038 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-155 |
| Cow position: | chr2:53329687-53329533 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 1-160 |
| Cow position: | chr2:52062600-52062441 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-207 |
| Cow position: | chr2:28642885-28643099 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 82, 38 |
| Conread position: | 1-214 |
| Cow position: | chr2:1363093-1362870 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 131, 33 |
| Conread position: | 1-214 |
| Cow position: | chr2:39622553-39622337 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 135, 38 |
| Conread position: | 1-214 |
| Cow position: | chr2:78742242-78742012 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 30 |
| Conread position: | 1-216 |
| Cow position: | chr2:5963149-5963380 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 2-139 |
| Cow position: | chr2:36980306-36980172 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 32 |
| Conread position: | 2-203 |
| Cow position: | chr2:7902946-7902742 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 117, 32 |
| Conread position: | 2-214 |
| Cow position: | chr2:11729795-11729586 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 107, 32 |
| Conread position: | 3-141 |
| Cow position: | chr2:82167543-82167407 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 111, 31 |
| Conread position: | 3-161 |
| Cow position: | chr2:2364116-2363957 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 31 |
| Conread position: | 3-161 |
| Cow position: | chr2:30381512-30381353 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 4-140 |
| Cow position: | chr2:422999-422859 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 4-141 |
| Cow position: | chr2:26869198-26869058 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 5-139 |
| Cow position: | chr2:282764-282895 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 29 |
| Conread position: | 9-209 |
| Cow position: | chr2:36030413-36030618 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 109, 25 |
| Conread position: | 16-216 |
| Cow position: | chr2:28748064-28747863 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 36-357 |
| Cow position: | chr2:74390587-74390915 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 79-216 |
| Cow position: | chr2:781879-782024 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 123 |
| Conread position: | 165-507 |
| Cow position: | chr2:75675812-75676158 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 242-509 |
| Cow position: | chr2:201427-201699 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 139 |
| Conread position: | 246-507 |
| Cow position: | chr2:63292540-63292807 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 154 |
| Conread position: | 271-507 |
| Cow position: | chr2:73191948-73191706 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 272-503 |
| Cow position: | chr2:7211691-7211462 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 109, 7 |
| Conread position: | 281-458 |
| Cow position: | chr2:42333289-42333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 281-492 |
| Cow position: | chr2:72596449-72596241 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 166, 111 |
| Conread position: | 281-509 |
| Cow position: | chr2:32389772-32389543 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 193 |
| Conread position: | 297-458 |
| Cow position: | chr2:29145715-29145878 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 147, 25 |
| Conread position: | 342-508 |
| Cow position: | chr2:74391179-74391348 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 366-508 |
| Cow position: | chr2:1672771-1672910 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 366-509 |
| Cow position: | chr2:24393272-24393413 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 366-509 |
| Cow position: | chr2:36053751-36053896 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 373-507 |
| Cow position: | chr2:15577677-15577813 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 373-509 |
| Cow position: | chr2:7902172-7902034 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 74, 66 |
Show alignments to all cow chromosomes.