Cow genome map
| Conread name: | rplun0138_k1.y1 |
| Conread position: | 1-133 |
| Cow position: | chr3:6878737-6878865 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 118, 23 |
| Conread position: | 1-133 |
| Cow position: | chr3:19944365-19944232 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-133 |
| Cow position: | chr3:72630390-72630259 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-134 |
| Cow position: | chr3:46502855-46502719 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:7480911-7481046 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-139 |
| Cow position: | chr3:10239975-10239839 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:18542086-18542222 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:21182366-21182501 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:23290021-23290156 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 1-139 |
| Cow position: | chr3:40823708-40823573 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:48060509-48060646 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:49137217-49137354 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:59861687-59861552 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:75040848-75040984 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chr3:78027089-78027224 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 8 |
| Conread position: | 1-140 |
| Cow position: | chr3:5953865-5954005 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr3:18811821-18811681 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 1-140 |
| Cow position: | chr3:19756637-19756778 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr3:49544889-49545026 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr3:57484408-57484549 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chr3:64017047-64017184 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 1-141 |
| Cow position: | chr3:50915647-50915508 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 134, 42 |
| Conread position: | 1-143 |
| Cow position: | chr3:46860988-46861130 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-145 |
| Cow position: | chr3:49678113-49677971 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 1-160 |
| Cow position: | chr3:594898-594739 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-161 |
| Cow position: | chr3:29330956-29331115 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-161 |
| Cow position: | chr3:77424126-77423961 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 1-162 |
| Cow position: | chr3:56340105-56340266 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 141, 33 |
| Conread position: | 1-194 |
| Cow position: | chr3:48230141-48230339 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 118, 23 |
| Conread position: | 1-210 |
| Cow position: | chr3:15179020-15178812 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 22 |
| Conread position: | 1-215 |
| Cow position: | chr3:6686129-6685900 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 1-215 |
| Cow position: | chr3:52863815-52864039 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 117, 18 |
| Conread position: | 1-216 |
| Cow position: | chr3:66991412-66991188 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 1-217 |
| Cow position: | chr3:24591006-24591220 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 1-217 |
| Cow position: | chr3:58947947-58947725 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-509 |
| Cow position: | chr3:64357522-64358024 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 2-131 |
| Cow position: | chr3:66620493-66620366 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-140 |
| Cow position: | chr3:36881600-36881741 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 32 |
| Conread position: | 2-172 |
| Cow position: | chr3:26822188-26822353 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 13 |
| Conread position: | 2-196 |
| Cow position: | chr3:32841705-32841900 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 117, 35 |
| Conread position: | 2-216 |
| Cow position: | chr3:18356183-18356390 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-249 |
| Cow position: | chr3:38492960-38492710 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 189, 21 |
| Conread position: | 3-126 |
| Cow position: | chr3:55229380-55229504 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 3-216 |
| Cow position: | chr3:2907450-2907658 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 123, 36 |
| Conread position: | 4-133 |
| Cow position: | chr3:41000428-41000298 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 5-141 |
| Cow position: | chr3:5995384-5995517 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 114, 29 |
| Conread position: | 17-133 |
| Cow position: | chr3:3806634-3806516 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 17-214 |
| Cow position: | chr3:50127404-50127620 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 34-216 |
| Cow position: | chr3:46015930-46015748 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 100, 59 |
| Conread position: | 240-507 |
| Cow position: | chr3:83294895-83295177 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 243-449 |
| Cow position: | chr3:36127793-36127578 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 243-508 |
| Cow position: | chr3:36098304-36098573 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 243-509 |
| Cow position: | chr3:4027690-4027417 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 131 |
| Conread position: | 243-509 |
| Cow position: | chr3:32842044-32842304 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 245-509 |
| Cow position: | chr3:14753880-14754152 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 224 |
| Conread position: | 275-509 |
| Cow position: | chr3:34093066-34093304 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 161, 77 |
| Conread position: | 281-462 |
| Cow position: | chr3:5391353-5391172 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 127, 69 |
| Conread position: | 281-506 |
| Cow position: | chr3:3980761-3980533 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 281-507 |
| Cow position: | chr3:45774725-45774951 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 281-509 |
| Cow position: | chr3:15178675-15178459 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 283-509 |
| Cow position: | chr3:26949868-26949657 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 143, 99 |
| Conread position: | 288-505 |
| Cow position: | chr3:42631381-42631162 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 138, 130 |
| Conread position: | 313-467 |
| Cow position: | chr3:63241404-63241559 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 366-508 |
| Cow position: | chr3:52864179-52864323 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 72 |
| Conread position: | 366-509 |
| Cow position: | chr3:6685737-6685595 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 81, 11 |
| Conread position: | 366-509 |
| Cow position: | chr3:19802939-19802796 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 71, 132 |
| Conread position: | 366-509 |
| Cow position: | chr3:29595482-29595339 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 366-509 |
| Cow position: | chr3:48230715-48230860 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 373-509 |
| Cow position: | chr3:14632416-14632554 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 374-509 |
| Cow position: | chr3:39326998-39326862 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 17 |
Show alignments to all cow chromosomes.