Cow genome map
| Conread name: | rplun0138_k1.y1 |
| Conread position: | 1-129 |
| Cow position: | chrX:2482439-2482565 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-129 |
| Cow position: | chrX:29096399-29096273 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 33 |
| Conread position: | 1-131 |
| Cow position: | chrX:27426129-27426258 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-139 |
| Cow position: | chrX:18954327-18954463 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-139 |
| Cow position: | chrX:21829722-21829586 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-139 |
| Cow position: | chrX:26528173-26528038 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-140 |
| Cow position: | chrX:15599127-15598987 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chrX:22488379-22488238 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 41 |
| Conread position: | 1-140 |
| Cow position: | chrX:23040929-23041066 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chrX:23277217-23277077 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chrX:26758409-26758548 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chrX:29853371-29853508 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-140 |
| Cow position: | chrX:30231911-30232051 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 1-141 |
| Cow position: | chrX:26767001-26767142 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 117, 14 |
| Conread position: | 1-143 |
| Cow position: | chrX:2102050-2101908 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-143 |
| Cow position: | chrX:12343147-12343005 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-143 |
| Cow position: | chrX:21490388-21490247 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-143 |
| Cow position: | chrX:28634225-28634367 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-143 |
| Cow position: | chrX:30055544-30055687 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-143 |
| Cow position: | chrX:39563740-39563882 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-160 |
| Cow position: | chrX:970966-970806 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 1-160 |
| Cow position: | chrX:23391401-23391560 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-192 |
| Cow position: | chrX:29285636-29285445 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-210 |
| Cow position: | chrX:44387319-44387101 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-215 |
| Cow position: | chrX:13053218-13053008 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-216 |
| Cow position: | chrX:17667701-17667922 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 117, 71 |
| Conread position: | 1-216 |
| Cow position: | chrX:18534670-18534463 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 1-216 |
| Cow position: | chrX:40246683-40246905 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 1-252 |
| Cow position: | chrX:6282554-6282815 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 2-139 |
| Cow position: | chrX:15127046-15127180 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 2-147 |
| Cow position: | chrX:13412942-13413084 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 2-214 |
| Cow position: | chrX:31082164-31081938 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 115, 23 |
| Conread position: | 3-139 |
| Cow position: | chrX:16699496-16699362 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 116, 36 |
| Conread position: | 3-161 |
| Cow position: | chrX:21632388-21632549 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 31 |
| Conread position: | 3-161 |
| Cow position: | chrX:26627835-26627994 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 112, 12 |
| Conread position: | 4-133 |
| Cow position: | chrX:24136209-24136340 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 110, 35 |
| Conread position: | 4-141 |
| Cow position: | chrX:20804324-20804183 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 4-161 |
| Cow position: | chrX:21289295-21289453 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 7-141 |
| Cow position: | chrX:28603266-28603403 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 9-160 |
| Cow position: | chrX:32467441-32467291 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 110, 25 |
| Conread position: | 127-509 |
| Cow position: | chrX:20697890-20698278 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 238-392 |
| Cow position: | chrX:18611230-18611082 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 242-509 |
| Cow position: | chrX:2143569-2143301 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 14 |
| Conread position: | 243-506 |
| Cow position: | chrX:5840602-5840356 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 243-506 |
| Cow position: | chrX:28550158-28549889 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 236 |
| Conread position: | 243-509 |
| Cow position: | chrX:12972934-12973209 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 171 |
| Conread position: | 243-509 |
| Cow position: | chrX:17668009-17668281 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 140 |
| Conread position: | 243-509 |
| Cow position: | chrX:22130392-22130649 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 245-509 |
| Cow position: | chrX:40247031-40247295 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 246-443 |
| Cow position: | chrX:34991785-34991590 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 281-504 |
| Cow position: | chrX:37758207-37757989 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 281-509 |
| Cow position: | chrX:21269946-21270175 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 281-509 |
| Cow position: | chrX:30368765-30368997 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 109, 185 |
| Conread position: | 310-509 |
| Cow position: | chrX:24138803-24139007 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 318-507 |
| Cow position: | chrX:13052835-13052650 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 157, 39 |
| Conread position: | 320-509 |
| Cow position: | chrX:18533201-18533011 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 125, 92 |
| Conread position: | 338-509 |
| Cow position: | chrX:16016937-16017104 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 366-508 |
| Cow position: | chrX:31725192-31725048 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.