Cow genome map
| Conread name: | rrec30_n1.y1 |
| Conread position: | 1-148 |
| Cow position: | chr1:85400543-85400699 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-158 |
| Cow position: | chr1:3018352-3018507 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 142, 57 |
| Conread position: | 1-158 |
| Cow position: | chr1:53780730-53780570 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-188 |
| Cow position: | chr1:64972982-64972801 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 1-209 |
| Cow position: | chr1:33442615-33442833 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 1-213 |
| Cow position: | chr1:69286836-69287055 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 130 |
| Conread position: | 1-217 |
| Cow position: | chr1:85838414-85838203 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 139, 43 |
| Conread position: | 1-219 |
| Cow position: | chr1:41515492-41515728 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 1-225 |
| Cow position: | chr1:59013822-59014048 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 1-227 |
| Cow position: | chr1:42875085-42875313 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 148 |
| Conread position: | 1-228 |
| Cow position: | chr1:89089962-89090195 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-228 |
| Cow position: | chr1:95456926-95456694 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 122 |
| Conread position: | 1-231 |
| Cow position: | chr1:16973548-16973773 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-262 |
| Cow position: | chr1:77657114-77656855 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 1-283 |
| Cow position: | chr1:57743667-57743950 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 1-284 |
| Cow position: | chr1:4277223-4276948 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 1-284 |
| Cow position: | chr1:25119711-25119988 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 107 |
| Conread position: | 1-284 |
| Cow position: | chr1:41093553-41093839 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 241 |
| Conread position: | 1-284 |
| Cow position: | chr1:76860452-76860731 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 69, 169 |
| Conread position: | 1-284 |
| Cow position: | chr1:81765834-81766110 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 69, 45 |
| Conread position: | 1-284 |
| Cow position: | chr1:81925611-81925890 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 102 |
| Conread position: | 1-284 |
| Cow position: | chr1:89263034-89263322 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 240 |
| Conread position: | 2-202 |
| Cow position: | chr1:87242138-87241941 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 2-284 |
| Cow position: | chr1:72997543-72997261 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 55, 193 |
| Conread position: | 3-262 |
| Cow position: | chr1:95765811-95766068 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 3-276 |
| Cow position: | chr1:85529850-85530117 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 180 |
| Conread position: | 4-172 |
| Cow position: | chr1:3376482-3376312 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 4-219 |
| Cow position: | chr1:71976942-71976726 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 131, 27 |
| Conread position: | 4-219 |
| Cow position: | chr1:71978455-71978239 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 131, 27 |
| Conread position: | 4-228 |
| Cow position: | chr1:57246669-57246438 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 70, 109 |
| Conread position: | 4-278 |
| Cow position: | chr1:54390560-54390828 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 139, 61 |
| Conread position: | 4-284 |
| Cow position: | chr1:50618708-50618986 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 67, 124 |
| Conread position: | 5-244 |
| Cow position: | chr1:60567095-60566854 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 10-276 |
| Cow position: | chr1:56857394-56857133 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 132 |
| Conread position: | 12-170 |
| Cow position: | chr1:58515563-58515400 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 12-282 |
| Cow position: | chr1:76670244-76670510 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 13-278 |
| Cow position: | chr1:7790249-7790507 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 177, 123 |
| Conread position: | 20-276 |
| Cow position: | chr1:51875263-51875517 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 203 |
| Conread position: | 29-283 |
| Cow position: | chr1:65734482-65734719 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 112 |
| Conread position: | 32-276 |
| Cow position: | chr1:15368096-15368339 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 43-275 |
| Cow position: | chr1:88563392-88563614 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 160, 42 |
| Conread position: | 50-278 |
| Cow position: | chr1:25780922-25780693 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 127 |
| Conread position: | 50-284 |
| Cow position: | chr1:76847801-76848032 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 51-278 |
| Cow position: | chr1:76304117-76304343 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 62-284 |
| Cow position: | chr1:7491318-7491120 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 69-284 |
| Cow position: | chr1:61536223-61536426 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 69-284 |
| Cow position: | chr1:62141442-62141652 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 139 |
Show alignments to all cow chromosomes.