Cow genome map
| Conread name: | rrec30_n1.y1 |
| Conread position: | 1-175 |
| Cow position: | chr11:74191898-74192073 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 1-188 |
| Cow position: | chr11:70716045-70716242 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 1-199 |
| Cow position: | chr11:54361234-54361030 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-209 |
| Cow position: | chr11:81337673-81337880 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 1-218 |
| Cow position: | chr11:28394310-28394085 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 50, 206 |
| Conread position: | 1-219 |
| Cow position: | chr11:46777061-46777282 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 164 |
| Conread position: | 1-220 |
| Cow position: | chr11:46583175-46583399 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-225 |
| Cow position: | chr11:49037183-49037404 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 139, 46 |
| Conread position: | 1-233 |
| Cow position: | chr11:58211156-58211400 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-262 |
| Cow position: | chr11:44131602-44131335 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 1-273 |
| Cow position: | chr11:53855764-53855501 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 70, 145 |
| Conread position: | 1-275 |
| Cow position: | chr11:75354444-75354171 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 55, 215 |
| Conread position: | 1-276 |
| Cow position: | chr11:3681615-3681880 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 1-276 |
| Cow position: | chr11:27055480-27055752 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 1-278 |
| Cow position: | chr11:53307667-53307938 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 1-282 |
| Cow position: | chr11:48484837-48485118 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 225 |
| Conread position: | 1-283 |
| Cow position: | chr11:80471699-80472000 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 244 |
| Conread position: | 1-284 |
| Cow position: | chr11:37727326-37727039 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 123, 56 |
| Conread position: | 1-284 |
| Cow position: | chr11:51423191-51423479 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 142 |
| Conread position: | 1-284 |
| Cow position: | chr11:57753985-57754264 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 2-171 |
| Cow position: | chr11:15883641-15883818 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-231 |
| Cow position: | chr11:9295620-9295853 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 2-276 |
| Cow position: | chr11:30790551-30790838 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 43, 245 |
| Conread position: | 2-281 |
| Cow position: | chr11:27074075-27074354 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 3-284 |
| Cow position: | chr11:19490782-19490495 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 164 |
| Conread position: | 4-180 |
| Cow position: | chr11:17200937-17201119 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 4-188 |
| Cow position: | chr11:4246674-4246486 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 4-217 |
| Cow position: | chr11:2721035-2721256 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 4-255 |
| Cow position: | chr11:36765729-36765484 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 4-273 |
| Cow position: | chr11:51289795-51289524 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 186 |
| Conread position: | 4-284 |
| Cow position: | chr11:4865127-4865400 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 6-284 |
| Cow position: | chr11:77776822-77777099 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 49, 232 |
| Conread position: | 10-273 |
| Cow position: | chr11:43996864-43997130 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 192 |
| Conread position: | 13-219 |
| Cow position: | chr11:15942097-15942304 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 155 |
| Conread position: | 47-262 |
| Cow position: | chr11:2069543-2069320 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 187 |
| Conread position: | 50-270 |
| Cow position: | chr11:32016387-32016599 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 143-284 |
| Cow position: | chr11:62041506-62041369 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 158-284 |
| Cow position: | chr11:39484343-39484221 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 62 |
Show alignments to all cow chromosomes.