Cow genome map
| Conread name: | rrec30_n1.y1 |
| Conread position: | 1-127 |
| Cow position: | chr2:25385494-25385362 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-170 |
| Cow position: | chr2:8732556-8732730 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 1-171 |
| Cow position: | chr2:1837448-1837625 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 1-218 |
| Cow position: | chr2:5867250-5867472 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 1-219 |
| Cow position: | chr2:38187903-38188123 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 115 |
| Conread position: | 1-225 |
| Cow position: | chr2:79242152-79242375 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 1-228 |
| Cow position: | chr2:31783257-31783026 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 124 |
| Conread position: | 1-228 |
| Cow position: | chr2:76560665-76560428 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-231 |
| Cow position: | chr2:4224326-4224551 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 139, 87 |
| Conread position: | 1-231 |
| Cow position: | chr2:35883397-35883633 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 203 |
| Conread position: | 1-231 |
| Cow position: | chr2:46265374-46265138 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 55, 204 |
| Conread position: | 1-232 |
| Cow position: | chr2:50407164-50406937 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 139, 64 |
| Conread position: | 1-254 |
| Cow position: | chr2:26033033-26032782 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 1-263 |
| Cow position: | chr2:1657365-1657108 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 71, 185 |
| Conread position: | 1-268 |
| Cow position: | chr2:16872134-16871876 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 143, 55 |
| Conread position: | 1-270 |
| Cow position: | chr2:80840099-80840369 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 49, 235 |
| Conread position: | 1-278 |
| Cow position: | chr2:12491180-12490910 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 1-281 |
| Cow position: | chr2:30388687-30388422 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 1-284 |
| Cow position: | chr2:11705706-11705430 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 146, 67 |
| Conread position: | 1-284 |
| Cow position: | chr2:16415190-16414903 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 1-284 |
| Cow position: | chr2:20554312-20554585 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 1-284 |
| Cow position: | chr2:40772993-40772702 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 234 |
| Conread position: | 1-284 |
| Cow position: | chr2:43548515-43548790 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 140, 48 |
| Conread position: | 1-284 |
| Cow position: | chr2:64765844-64766131 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 2-217 |
| Cow position: | chr2:78854856-78854649 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 190, 52 |
| Conread position: | 2-239 |
| Cow position: | chr2:30187664-30187909 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 99 |
| Conread position: | 2-277 |
| Cow position: | chr2:26873674-26873408 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 208, 48 |
| Conread position: | 2-284 |
| Cow position: | chr2:287852-288143 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 48, 217 |
| Conread position: | 3-166 |
| Cow position: | chr2:74763785-74763956 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 3-183 |
| Cow position: | chr2:5756424-5756239 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 110 |
| Conread position: | 3-217 |
| Cow position: | chr2:46939932-46940147 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 3-264 |
| Cow position: | chr2:14556670-14556928 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 3-278 |
| Cow position: | chr2:1105822-1106089 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 3-283 |
| Cow position: | chr2:65717070-65717351 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 233 |
| Conread position: | 3-284 |
| Cow position: | chr2:62038988-62039254 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 4-218 |
| Cow position: | chr2:39504741-39504960 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 170 |
| Conread position: | 4-260 |
| Cow position: | chr2:45493375-45493635 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 4-278 |
| Cow position: | chr2:77067610-77067340 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 4-284 |
| Cow position: | chr2:445375-445082 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 266 |
| Conread position: | 10-280 |
| Cow position: | chr2:46272161-46272432 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 76 |
| Conread position: | 20-278 |
| Cow position: | chr2:52654005-52653748 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 22, 142 |
| Conread position: | 24-284 |
| Cow position: | chr2:39116847-39116580 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 178 |
| Conread position: | 24-284 |
| Cow position: | chr2:78645141-78645390 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 38-282 |
| Cow position: | chr2:33091305-33091060 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 42-284 |
| Cow position: | chr2:15734028-15733784 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 43-282 |
| Cow position: | chr2:294967-295206 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 14, 184 |
| Conread position: | 58-284 |
| Cow position: | chr2:46452789-46453010 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 70-284 |
| Cow position: | chr2:5299744-5299532 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 67, 109 |
| Conread position: | 73-263 |
| Cow position: | chr2:46256487-46256310 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 74-284 |
| Cow position: | chr2:17826675-17826476 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 142-284 |
| Cow position: | chr2:8346250-8346385 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.