Cow genome map
| Conread name: | rrec30_n1.y1 |
| Conread position: | 1-158 |
| Cow position: | chr5:57933880-57934043 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-175 |
| Cow position: | chr5:28700579-28700752 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 142, 65 |
| Conread position: | 1-188 |
| Cow position: | chr5:65600583-65600396 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 1-210 |
| Cow position: | chr5:48832736-48832530 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 1-219 |
| Cow position: | chr5:33775426-33775650 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 54, 150 |
| Conread position: | 1-226 |
| Cow position: | chr5:39936456-39936227 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-228 |
| Cow position: | chr5:17425791-17426025 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 54, 133 |
| Conread position: | 1-249 |
| Cow position: | chr5:28037442-28037201 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 135, 49 |
| Conread position: | 1-261 |
| Cow position: | chr5:49490325-49490075 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 1-264 |
| Cow position: | chr5:49565922-49565663 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 1-266 |
| Cow position: | chr5:41953951-41954202 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 1-271 |
| Cow position: | chr5:34285130-34285396 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 1-284 |
| Cow position: | chr5:40896991-40897278 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 230 |
| Conread position: | 1-284 |
| Cow position: | chr5:48409097-48409369 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 69 |
| Conread position: | 1-284 |
| Cow position: | chr5:54693758-54694033 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 2-225 |
| Cow position: | chr5:64009364-64009590 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 72, 184 |
| Conread position: | 2-284 |
| Cow position: | chr5:51858977-51859245 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 134, 44 |
| Conread position: | 2-284 |
| Cow position: | chr5:59771405-59771122 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 102 |
| Conread position: | 3-220 |
| Cow position: | chr5:7553117-7552900 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 128 |
| Conread position: | 3-276 |
| Cow position: | chr5:23346011-23345746 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 3-284 |
| Cow position: | chr5:28528969-28529246 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 144 |
| Conread position: | 4-265 |
| Cow position: | chr5:10096489-10096748 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 4-275 |
| Cow position: | chr5:23648080-23648346 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 4-284 |
| Cow position: | chr5:41548197-41548471 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 47 |
| Conread position: | 5-233 |
| Cow position: | chr5:15855878-15856111 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 106 |
| Conread position: | 5-284 |
| Cow position: | chr5:62143608-62143888 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 46, 180 |
| Conread position: | 7-173 |
| Cow position: | chr5:25638682-25638850 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 9-164 |
| Cow position: | chr5:21592512-21592351 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 10-139 |
| Cow position: | chr5:50189300-50189167 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 10-204 |
| Cow position: | chr5:72298922-72299122 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 127 |
| Conread position: | 11-262 |
| Cow position: | chr5:18883264-18883509 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 11-284 |
| Cow position: | chr5:50063887-50063619 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 41, 147 |
| Conread position: | 32-284 |
| Cow position: | chr5:4328610-4328362 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 184 |
| Conread position: | 35-284 |
| Cow position: | chr5:34471630-34471866 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 62 |
Show alignments to all cow chromosomes.