Cow genome map

Conread name: rsag032_k21.y1

Conread position: 1-168
Cow position: chr1:94659468-94659634 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 37

Conread position: 1-218
Cow position: chr1:3934562-3934348 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 56, 37

Conread position: 1-241
Cow position: chr1:73071426-73071178 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 37

Conread position: 1-279
Cow position: chr1:52172880-52172589 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 56, 37

Conread position: 1-332
Cow position: chr1:68607957-68607613 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 1-359
Cow position: chr1:55276888-55276521 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-359
Cow position: chr1:85881342-85881707 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-360
Cow position: chr1:58335427-58335802 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 37

Conread position: 1-360
Cow position: chr1:85781189-85780812 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-361
Cow position: chr1:5501569-5501942 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 37

Conread position: 1-361
Cow position: chr1:28872668-28873044 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-361
Cow position: chr1:69922872-69922498 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 1-361
Cow position: chr1:76753058-76752686 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-361
Cow position: chr1:100597791-100597415 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:3386415-3386037 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 1-364
Cow position: chr1:13253840-13253468 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:18244784-18244410 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 37

Conread position: 1-364
Cow position: chr1:25180440-25180061 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:25549654-25550033 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:33550514-33550888 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:42736048-42736426 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:49974597-49974221 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:56194340-56193962 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:57367541-57367163 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:57567541-57567920 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 26

Conread position: 1-364
Cow position: chr1:63606192-63605812 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 37

Conread position: 1-364
Cow position: chr1:72980873-72981237 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:76545948-76545573 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:76623354-76622988 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:79457376-79456998 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 25

Conread position: 1-364
Cow position: chr1:86699629-86699248 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:88130352-88130728 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr1:93854112-93854490 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 19

Conread position: 4-364
Cow position: chr1:55775752-55776123 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 23

Conread position: 4-364
Cow position: chr1:62245056-62244678 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 34

Conread position: 4-364
Cow position: chr1:62806207-62805836 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 4-364
Cow position: chr1:72187277-72186903 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 34

Conread position: 5-188
Cow position: chr1:72080073-72080265 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 33

Conread position: 5-234
Cow position: chr1:13449786-13450024 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 33

Conread position: 5-252
Cow position: chr1:58223896-58224147 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 55, 33

Conread position: 5-329
Cow position: chr1:56162926-56163258 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 62, 33

Conread position: 5-358
Cow position: chr1:82652239-82652600 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 5-359
Cow position: chr1:40685090-40684726 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 252
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 52, 33

Conread position: 5-361
Cow position: chr1:79637336-79636963 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 260
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 56, 34

Conread position: 5-364
Cow position: chr1:17942217-17941841 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 5-364
Cow position: chr1:31366483-31366107 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 5-364
Cow position: chr1:40513892-40513531 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 20

Conread position: 5-364
Cow position: chr1:57656154-57656518 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 33

Conread position: 5-364
Cow position: chr1:97227108-97226736 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 6-361
Cow position: chr1:102435432-102435060 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 32

Conread position: 6-363
Cow position: chr1:76703770-76703410 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 251
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 52, 32

Conread position: 6-364
Cow position: chr1:79336205-79335835 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 13-308
Cow position: chr1:20988372-20988671 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 44, 25

Conread position: 13-343
Cow position: chr1:8824665-8825006 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 25

Conread position: 15-240
Cow position: chr1:8027537-8027303 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 23

Conread position: 15-308
Cow position: chr1:53198397-53198704 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 42, 23

Conread position: 15-359
Cow position: chr1:80359560-80359205 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 15-364
Cow position: chr1:85791301-85791657 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 15-364
Cow position: chr1:86548517-86548164 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 16-241
Cow position: chr1:37420365-37420134 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 22

Conread position: 16-299
Cow position: chr1:42176773-42176498 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 150, 22

Conread position: 16-330
Cow position: chr1:102555698-102556018 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 41, 22

Conread position: 16-356
Cow position: chr1:69287950-69287602 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 231
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 29

Conread position: 16-361
Cow position: chr1:55323913-55323555 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 22

Conread position: 18-311
Cow position: chr1:67902818-67902508 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 14, 21

Conread position: 18-359
Cow position: chr1:62925219-62925578 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 25

Conread position: 18-364
Cow position: chr1:33711669-33712033 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 18-364
Cow position: chr1:82919041-82918692 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 18-364
Cow position: chr1:87244407-87244763 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 22

Conread position: 20-364
Cow position: chr1:89740618-89740275 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 22-332
Cow position: chr1:67286122-67286424 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 16

Conread position: 23-332
Cow position: chr1:30027916-30027608 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 10

Conread position: 23-364
Cow position: chr1:101858369-101858014 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 200

Conread position: 25-210
Cow position: chr1:30283981-30283794 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 42, 13

Conread position: 25-212
Cow position: chr1:97560333-97560528 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 13

Conread position: 25-249
Cow position: chr1:99995478-99995245 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 13

Conread position: 25-328
Cow position: chr1:87449568-87449884 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 25-358
Cow position: chr1:8553943-8554292 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 245
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 35, 13

Conread position: 25-358
Cow position: chr1:11292489-11292140 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-358
Cow position: chr1:18880770-18880429 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 14

Conread position: 25-359
Cow position: chr1:31396038-31396378 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 14

Conread position: 25-359
Cow position: chr1:39543386-39543736 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr1:40052974-40053320 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr1:56489462-56489805 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr1:61308626-61308967 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 13

Conread position: 25-359
Cow position: chr1:71562952-71562613 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr1:82564120-82564468 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr1:89425205-89425552 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr1:43019743-43020093 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr1:59210519-59210169 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 249
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 13

Conread position: 27-364
Cow position: chr1:45097339-45097672 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 73

Conread position: 29-364
Cow position: chr1:101149461-101149802 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 218

Conread position: 30-359
Cow position: chr1:17013119-17012771 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 30-359
Cow position: chr1:67835514-67835174 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 282

Conread position: 30-364
Cow position: chr1:40953328-40953672 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 259
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 182

Conread position: 30-364
Cow position: chr1:42290021-42290363 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 94

Conread position: 30-364
Cow position: chr1:62854206-62853874 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 26

Conread position: 30-364
Cow position: chr1:89810009-89809652 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 250

Conread position: 31-359
Cow position: chr1:91898628-91898963 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 7

Conread position: 31-364
Cow position: chr1:52233476-52233142 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 9

Conread position: 31-364
Cow position: chr1:72656604-72656951 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 35-364
Cow position: chr1:89900077-89899732 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 172

Conread position: 35-364
Cow position: chr1:97123457-97123802 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 172

Conread position: 38-271
Cow position: chr1:88759193-88759441 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 38-359
Cow position: chr1:69766099-69766427 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 170

Conread position: 38-364
Cow position: chr1:22000330-21999986 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 38-364
Cow position: chr1:89771049-89770713 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 20

Conread position: 40-360
Cow position: chr1:69536532-69536868 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 214

Conread position: 40-364
Cow position: chr1:28801797-28801450 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 44-363
Cow position: chr1:25887498-25887189 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 17, 46

Conread position: 45-331
Cow position: chr1:98661657-98661362 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 12, 238

Conread position: 47-364
Cow position: chr1:38387983-38387679 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 221
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 287, 10

Conread position: 47-364
Cow position: chr1:38414448-38414770 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 37

Conread position: 50-280
Cow position: chr1:28722431-28722675 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 187
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 7, 0

Conread position: 50-364
Cow position: chr1:88635017-88635341 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 57-364
Cow position: chr1:1461681-1461358 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 299

Conread position: 61-363
Cow position: chr1:54366161-54365855 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 21, 150

Conread position: 77-364
Cow position: chr1:20828564-20828859 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 89, 58

Conread position: 88-364
Cow position: chr1:56144652-56144368 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 40, 238

Conread position: 90-364
Cow position: chr1:40307751-40308034 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 130-330
Cow position: chr1:89478774-89478969 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 18, 36

Conread position: 141-364
Cow position: chr1:102548971-102549200 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 58

Conread position: 143-331
Cow position: chr1:87969091-87969281 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 143-364
Cow position: chr1:87207670-87207447 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 14, 104

Conread position: 175-364
Cow position: chr1:56722929-56723125 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 68, 139

Conread position: 176-364
Cow position: chr1:72136418-72136609 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 64, 0

Conread position: 178-361
Cow position: chr1:28276418-28276604 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 152, 0

Conread position: 198-364
Cow position: chr1:78289678-78289851 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 230-364
Cow position: chr1:37419916-37419782 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 53

Conread position: 230-364
Cow position: chr1:79884997-79884860 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 104, 0

Show alignments to all cow chromosomes.