Cow genome map
| Conread name: | rsag032_k21.y1 |
| Conread position: | 1-249 |
| Cow position: | chr18:14129929-14130185 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-315 |
| Cow position: | chr18:32293407-32293736 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 1-361 |
| Cow position: | chr18:16176972-16176603 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr18:23797285-23797660 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr18:28974263-28973890 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 28 |
| Conread position: | 1-364 |
| Cow position: | chr18:36507967-36508346 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr18:37504700-37505076 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr18:51480474-51480851 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 2-359 |
| Cow position: | chr18:11275453-11275098 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 4-359 |
| Cow position: | chr18:44621395-44621767 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 5-363 |
| Cow position: | chr18:54172205-54171833 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 5-364 |
| Cow position: | chr18:16660359-16659992 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 5-364 |
| Cow position: | chr18:19352016-19352398 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 5-364 |
| Cow position: | chr18:41841187-41840813 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 5-364 |
| Cow position: | chr18:54024717-54024346 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 9-364 |
| Cow position: | chr18:25349682-25350052 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 12-328 |
| Cow position: | chr18:27838655-27838329 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 12-364 |
| Cow position: | chr18:14415624-14415989 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 13-244 |
| Cow position: | chr18:35287900-35288136 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 15-359 |
| Cow position: | chr18:16078353-16078707 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 15-364 |
| Cow position: | chr18:51660072-51660430 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 15-364 |
| Cow position: | chr18:55089277-55088912 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 16-363 |
| Cow position: | chr18:45958352-45958695 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 16-364 |
| Cow position: | chr18:33335523-33335881 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 18-364 |
| Cow position: | chr18:23944720-23944360 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 18-364 |
| Cow position: | chr18:35335139-35335502 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 22 |
| Conread position: | 21-364 |
| Cow position: | chr18:33358516-33358880 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 22-307 |
| Cow position: | chr18:29899982-29900271 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 25-359 |
| Cow position: | chr18:33953909-33953560 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-364 |
| Cow position: | chr18:47741676-47742031 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 30-364 |
| Cow position: | chr18:51257647-51257990 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 26 |
| Conread position: | 30-364 |
| Cow position: | chr18:51310251-51310593 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 31-364 |
| Cow position: | chr18:2020013-2019673 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 17 |
| Conread position: | 31-364 |
| Cow position: | chr18:48221543-48221890 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 33-364 |
| Cow position: | chr18:39748249-39748589 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 40-290 |
| Cow position: | chr18:47719897-47719633 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 40-364 |
| Cow position: | chr18:43147253-43146913 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 44-364 |
| Cow position: | chr18:1520804-1521144 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 48-360 |
| Cow position: | chr18:40345613-40345315 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 191, 38 |
| Conread position: | 49-364 |
| Cow position: | chr18:40478066-40478400 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 50-364 |
| Cow position: | chr18:33268526-33268855 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 57-364 |
| Cow position: | chr18:17992871-17992550 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 179 |
| Conread position: | 58-360 |
| Cow position: | chr18:27986720-27987036 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 254 |
| Conread position: | 60-364 |
| Cow position: | chr18:32651689-32652008 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 217 |
| Conread position: | 136-364 |
| Cow position: | chr18:16533765-16533992 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 197, 11 |
| Conread position: | 148-364 |
| Cow position: | chr18:6869465-6869244 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 93, 85 |
| Conread position: | 167-364 |
| Cow position: | chr18:53785649-53785850 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 217-364 |
| Cow position: | chr18:2887164-2887008 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 231-364 |
| Cow position: | chr18:54044825-54044690 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.