Cow genome map

Conread name: rsag032_k21.y1

Conread position: 1-225
Cow position: chr2:28792139-28792369 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 56, 37

Conread position: 1-240
Cow position: chr2:36979183-36979432 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 56, 41

Conread position: 1-361
Cow position: chr2:24921427-24921802 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr2:10187141-10186774 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 26

Conread position: 1-364
Cow position: chr2:10269576-10269201 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 1-364
Cow position: chr2:11160045-11159667 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 37

Conread position: 1-364
Cow position: chr2:13046597-13046230 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr2:16899326-16899706 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 41

Conread position: 1-364
Cow position: chr2:19009315-19009693 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 37

Conread position: 1-364
Cow position: chr2:24145361-24145735 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 26

Conread position: 1-364
Cow position: chr2:28651143-28650767 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 15

Conread position: 1-364
Cow position: chr2:45214175-45213796 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr2:47810105-47810470 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 1-364
Cow position: chr2:53328832-53329208 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr2:81255889-81256277 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 272
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 56, 37

Conread position: 2-331
Cow position: chr2:42334184-42333843 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 21

Conread position: 2-363
Cow position: chr2:3729826-3730188 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 5-329
Cow position: chr2:54736715-54737045 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 5-360
Cow position: chr2:47604709-47604350 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 246
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 56, 33

Conread position: 5-364
Cow position: chr2:78741235-78741590 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 146, 33

Conread position: 6-364
Cow position: chr2:283607-283233 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 32

Conread position: 6-364
Cow position: chr2:782639-782281 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 33

Conread position: 6-364
Cow position: chr2:976186-975818 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 6-364
Cow position: chr2:1673560-1673198 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 14

Conread position: 6-364
Cow position: chr2:12225062-12224687 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 32

Conread position: 6-364
Cow position: chr2:44935978-44935625 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 14

Conread position: 6-364
Cow position: chr2:65939361-65938988 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 32

Conread position: 9-329
Cow position: chr2:32388657-32388987 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 30

Conread position: 13-183
Cow position: chr2:6879273-6879441 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 25

Conread position: 13-359
Cow position: chr2:2380221-2380580 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 25

Conread position: 13-364
Cow position: chr2:2185164-2184797 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 222
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 126, 0

Conread position: 13-364
Cow position: chr2:2357359-2356999 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 27

Conread position: 13-364
Cow position: chr2:16288348-16288706 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 25

Conread position: 13-364
Cow position: chr2:44992186-44991820 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 25

Conread position: 14-280
Cow position: chr2:2363248-2363526 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 26

Conread position: 14-363
Cow position: chr2:20904034-20903679 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 12, 223

Conread position: 15-329
Cow position: chr2:52615566-52615893 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 15-357
Cow position: chr2:213129-212766 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 246
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 42, 23

Conread position: 15-357
Cow position: chr2:2413695-2413344 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 15-364
Cow position: chr2:39420689-39421052 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 15-364
Cow position: chr2:59414568-59414220 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 45, 23

Conread position: 16-330
Cow position: chr2:78761584-78761898 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 22

Conread position: 16-364
Cow position: chr2:54649699-54649342 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 13

Conread position: 17-364
Cow position: chr2:36031960-36031611 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 21

Conread position: 17-364
Cow position: chr2:56438617-56438260 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 21

Conread position: 18-364
Cow position: chr2:422168-422530 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 22

Conread position: 20-364
Cow position: chr2:10733722-10733378 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 18

Conread position: 21-364
Cow position: chr2:202550-202193 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 17

Conread position: 22-269
Cow position: chr2:15578550-15578294 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 125, 16

Conread position: 22-364
Cow position: chr2:14560302-14560659 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 23-364
Cow position: chr2:32654456-32654806 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 15

Conread position: 25-359
Cow position: chr2:3325462-3325110 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 35, 13

Conread position: 25-359
Cow position: chr2:26865434-26865088 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr2:47039299-47038958 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr2:80956536-80956182 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 250
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr2:5905745-5905388 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 25-364
Cow position: chr2:25031361-25031016 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 13

Conread position: 25-364
Cow position: chr2:44090411-44090759 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 26-364
Cow position: chr2:82166723-82167068 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 14

Conread position: 30-212
Cow position: chr2:44166236-44166044 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 30-354
Cow position: chr2:57334311-57334650 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 30-364
Cow position: chr2:1491318-1490968 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 229

Conread position: 30-364
Cow position: chr2:41171805-41172147 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 136

Conread position: 30-364
Cow position: chr2:44345826-44346175 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 30-364
Cow position: chr2:52152745-52152393 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 30-364
Cow position: chr2:85356660-85356310 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 31-357
Cow position: chr2:4235298-4235629 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 217
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 130, 13

Conread position: 31-358
Cow position: chr2:67421734-67421391 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 31-364
Cow position: chr2:2102342-2102008 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 26, 9

Conread position: 38-311
Cow position: chr2:40452637-40452927 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 239

Conread position: 38-355
Cow position: chr2:27816893-27817227 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 38-359
Cow position: chr2:41685630-41685968 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 38-360
Cow position: chr2:75250890-75251210 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 40

Conread position: 38-364
Cow position: chr2:6877612-6877950 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 282

Conread position: 38-364
Cow position: chr2:22076911-22077253 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 298

Conread position: 38-364
Cow position: chr2:26920813-26921156 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 242
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 38-364
Cow position: chr2:51305777-51305448 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 19

Conread position: 40-309
Cow position: chr2:49603851-49604132 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 20, 161

Conread position: 41-361
Cow position: chr2:53552306-53552628 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 17, 84

Conread position: 41-364
Cow position: chr2:72922709-72922372 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 47-332
Cow position: chr2:52655600-52655894 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 28

Conread position: 47-364
Cow position: chr2:5481508-5481182 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 212

Conread position: 50-364
Cow position: chr2:11969623-11969302 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 45

Conread position: 53-364
Cow position: chr2:10712276-10711970 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 25

Conread position: 56-364
Cow position: chr2:46945799-46946127 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 57-364
Cow position: chr2:10844199-10843879 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 235
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 89, 227

Conread position: 60-363
Cow position: chr2:80516213-80516509 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 102, 16

Conread position: 60-364
Cow position: chr2:50076744-50077060 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 67, 276

Conread position: 61-364
Cow position: chr2:49471388-49471706 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 22

Conread position: 62-364
Cow position: chr2:6773022-6772712 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 234
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 15, 138

Conread position: 145-325
Cow position: chr2:28621589-28621410 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 149-360
Cow position: chr2:37790909-37790697 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 186, 90

Conread position: 171-332
Cow position: chr2:34565666-34565502 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 77, 6

Conread position: 184-364
Cow position: chr2:26868549-26868733 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 111, 89

Conread position: 185-364
Cow position: chr2:7901557-7901745 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 71, 44

Conread position: 202-330
Cow position: chr2:61130995-61130868 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 61, 39

Conread position: 206-364
Cow position: chr2:7211000-7211164 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 214-364
Cow position: chr2:40245362-40245518 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 25, 70

Show alignments to all cow chromosomes.