Cow genome map
Conread name: | rsag032_k21.y1 |
Conread position: | 1-364 |
Cow position: | chr21:145634-146012 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr21:1190756-1191141 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr21:10566393-10566766 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 272 |
Conread position: | 1-364 |
Cow position: | chr21:10849794-10850173 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr21:30600199-30599827 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 37 |
Conread position: | 1-364 |
Cow position: | chr21:33251106-33251485 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr21:48115822-48116202 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 37 |
Conread position: | 2-363 |
Cow position: | chr21:23860498-23860875 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 36 |
Conread position: | 2-364 |
Cow position: | chr21:2884018-2883655 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 14 |
Conread position: | 4-358 |
Cow position: | chr21:2501654-2502015 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 34 |
Conread position: | 4-359 |
Cow position: | chr21:39424787-39425151 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 34 |
Conread position: | 5-279 |
Cow position: | chr21:5016312-5016023 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 194 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 62, 33 |
Conread position: | 5-364 |
Cow position: | chr21:1292456-1292086 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 33 |
Conread position: | 5-364 |
Cow position: | chr21:2415963-2416328 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 24 |
Conread position: | 5-364 |
Cow position: | chr21:7267814-7267450 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 33 |
Conread position: | 6-360 |
Cow position: | chr21:3778486-3778855 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 17 |
Conread position: | 13-359 |
Cow position: | chr21:2510383-2510739 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 25 |
Conread position: | 13-362 |
Cow position: | chr21:20745013-20744668 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 249 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 40, 26 |
Conread position: | 13-364 |
Cow position: | chr21:4590231-4589899 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 248 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 148, 25 |
Conread position: | 14-364 |
Cow position: | chr21:34292749-34293110 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 26 |
Conread position: | 15-359 |
Cow position: | chr21:26638728-26638377 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 23 |
Conread position: | 16-364 |
Cow position: | chr21:2769722-2769368 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 24 |
Conread position: | 16-364 |
Cow position: | chr21:4183272-4183617 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 21 |
Conread position: | 18-332 |
Cow position: | chr21:4076578-4076903 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 22 |
Conread position: | 18-361 |
Cow position: | chr21:47939210-47939576 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 257 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 39, 22 |
Conread position: | 18-364 |
Cow position: | chr21:34259479-34259128 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 22 |
Conread position: | 21-157 |
Cow position: | chr21:35089437-35089573 (view UCSC Genome Browser custom track) |
Alignm length: | 138 |
Alignm identity: | 108 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 36, 16 |
Conread position: | 25-356 |
Cow position: | chr21:28529804-28529459 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-358 |
Cow position: | chr21:4090388-4090736 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 247 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 35, 13 |
Conread position: | 25-359 |
Cow position: | chr21:11453915-11453568 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 238 |
Alignm E-value: | 9e-38 |
Alignm gaps (pig, cow): | 35, 13 |
Conread position: | 25-359 |
Cow position: | chr21:12056259-12055912 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-359 |
Cow position: | chr21:27708500-27708850 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 14 |
Conread position: | 25-359 |
Cow position: | chr21:37044660-37045001 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 241 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 35, 13 |
Conread position: | 25-359 |
Cow position: | chr21:46915330-46915675 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 30-363 |
Cow position: | chr21:13124256-13123907 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 67 |
Conread position: | 30-364 |
Cow position: | chr21:3615039-3615385 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 10 |
Conread position: | 30-364 |
Cow position: | chr21:4222955-4222594 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 88 |
Conread position: | 31-364 |
Cow position: | chr21:2716925-2716590 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 9 |
Conread position: | 31-364 |
Cow position: | chr21:23811657-23811969 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 244 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 26, 8 |
Conread position: | 37-359 |
Cow position: | chr21:11505336-11505675 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 209 |
Conread position: | 38-359 |
Cow position: | chr21:26819263-26818933 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 206 |
Conread position: | 38-360 |
Cow position: | chr21:47947868-47948198 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 10 |
Conread position: | 40-364 |
Cow position: | chr21:35596133-35596461 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 125 |
Conread position: | 43-295 |
Cow position: | chr21:21031496-21031757 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 187 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 77, 111 |
Conread position: | 45-308 |
Cow position: | chr21:6699804-6699522 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 189 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 12, 233 |
Conread position: | 45-364 |
Cow position: | chr21:9891370-9891687 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 236 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 12, 82 |
Conread position: | 49-357 |
Cow position: | chr21:2674876-2674543 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 235 |
Alignm E-value: | 9e-38 |
Alignm gaps (pig, cow): | 8, 293 |
Conread position: | 49-363 |
Cow position: | chr21:2530364-2530035 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 261 |
Conread position: | 60-364 |
Cow position: | chr21:2789208-2788898 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 133 |
Conread position: | 60-364 |
Cow position: | chr21:3426259-3426578 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 23 |
Conread position: | 62-364 |
Cow position: | chr21:30561577-30561895 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 0 |
Conread position: | 75-332 |
Cow position: | chr21:36714428-36714691 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 187 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 61, 46 |
Conread position: | 129-364 |
Cow position: | chr21:2541561-2541320 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 176 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 112, 9 |
Conread position: | 143-364 |
Cow position: | chr21:33755165-33755397 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 169 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 56, 45 |
Conread position: | 148-364 |
Cow position: | chr21:27623-27836 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 162 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 22, 94 |
Conread position: | 163-364 |
Cow position: | chr21:4456715-4456920 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 150 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 78, 34 |
Show alignments to all cow chromosomes.