Cow genome map

Conread name: rsag032_k21.y1

Conread position: 1-364
Cow position: chr21:145634-146012 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr21:1190756-1191141 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr21:10566393-10566766 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 272

Conread position: 1-364
Cow position: chr21:10849794-10850173 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr21:30600199-30599827 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 37

Conread position: 1-364
Cow position: chr21:33251106-33251485 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr21:48115822-48116202 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 37

Conread position: 2-363
Cow position: chr21:23860498-23860875 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 2-364
Cow position: chr21:2884018-2883655 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 14

Conread position: 4-358
Cow position: chr21:2501654-2502015 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 34

Conread position: 4-359
Cow position: chr21:39424787-39425151 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 34

Conread position: 5-279
Cow position: chr21:5016312-5016023 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 194
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 33

Conread position: 5-364
Cow position: chr21:1292456-1292086 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 33

Conread position: 5-364
Cow position: chr21:2415963-2416328 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 24

Conread position: 5-364
Cow position: chr21:7267814-7267450 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 33

Conread position: 6-360
Cow position: chr21:3778486-3778855 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 13-359
Cow position: chr21:2510383-2510739 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 25

Conread position: 13-362
Cow position: chr21:20745013-20744668 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 249
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 40, 26

Conread position: 13-364
Cow position: chr21:4590231-4589899 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 248
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 148, 25

Conread position: 14-364
Cow position: chr21:34292749-34293110 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 26

Conread position: 15-359
Cow position: chr21:26638728-26638377 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 16-364
Cow position: chr21:2769722-2769368 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 24

Conread position: 16-364
Cow position: chr21:4183272-4183617 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 21

Conread position: 18-332
Cow position: chr21:4076578-4076903 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 18-361
Cow position: chr21:47939210-47939576 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 39, 22

Conread position: 18-364
Cow position: chr21:34259479-34259128 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 22

Conread position: 21-157
Cow position: chr21:35089437-35089573 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 36, 16

Conread position: 25-356
Cow position: chr21:28529804-28529459 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-358
Cow position: chr21:4090388-4090736 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 35, 13

Conread position: 25-359
Cow position: chr21:11453915-11453568 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 238
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 35, 13

Conread position: 25-359
Cow position: chr21:12056259-12055912 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr21:27708500-27708850 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 14

Conread position: 25-359
Cow position: chr21:37044660-37045001 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 241
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 35, 13

Conread position: 25-359
Cow position: chr21:46915330-46915675 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 30-363
Cow position: chr21:13124256-13123907 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 67

Conread position: 30-364
Cow position: chr21:3615039-3615385 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 30-364
Cow position: chr21:4222955-4222594 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 88

Conread position: 31-364
Cow position: chr21:2716925-2716590 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 31-364
Cow position: chr21:23811657-23811969 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 26, 8

Conread position: 37-359
Cow position: chr21:11505336-11505675 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 209

Conread position: 38-359
Cow position: chr21:26819263-26818933 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 206

Conread position: 38-360
Cow position: chr21:47947868-47948198 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 10

Conread position: 40-364
Cow position: chr21:35596133-35596461 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 125

Conread position: 43-295
Cow position: chr21:21031496-21031757 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 187
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 77, 111

Conread position: 45-308
Cow position: chr21:6699804-6699522 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 233

Conread position: 45-364
Cow position: chr21:9891370-9891687 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 12, 82

Conread position: 49-357
Cow position: chr21:2674876-2674543 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 8, 293

Conread position: 49-363
Cow position: chr21:2530364-2530035 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 261

Conread position: 60-364
Cow position: chr21:2789208-2788898 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 133

Conread position: 60-364
Cow position: chr21:3426259-3426578 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 23

Conread position: 62-364
Cow position: chr21:30561577-30561895 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 75-332
Cow position: chr21:36714428-36714691 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 187
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 46

Conread position: 129-364
Cow position: chr21:2541561-2541320 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 112, 9

Conread position: 143-364
Cow position: chr21:33755165-33755397 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 56, 45

Conread position: 148-364
Cow position: chr21:27623-27836 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 22, 94

Conread position: 163-364
Cow position: chr21:4456715-4456920 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 78, 34

Show alignments to all cow chromosomes.