Cow genome map
| Conread name: | rsag032_k21.y1 |
| Conread position: | 1-167 |
| Cow position: | chr28:15035830-15035665 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-188 |
| Cow position: | chr28:7739840-7740037 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 1-361 |
| Cow position: | chr28:17388067-17388443 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 1-364 |
| Cow position: | chr28:781983-782360 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 281 |
| Conread position: | 1-364 |
| Cow position: | chr28:1168578-1168202 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:2083190-2083567 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:3193189-3192826 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:5565447-5565827 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:8378152-8378529 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:8721859-8721484 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 1-364 |
| Cow position: | chr28:10582395-10582021 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 1-364 |
| Cow position: | chr28:10619510-10619145 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 1-364 |
| Cow position: | chr28:13459560-13459934 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:14706085-14705707 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:17667926-17667549 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 1-364 |
| Cow position: | chr28:18520875-18520496 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:22261565-22261186 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr28:32792793-32792415 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 2-173 |
| Cow position: | chr28:1504229-1504398 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 2-332 |
| Cow position: | chr28:33251931-33252247 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 2-363 |
| Cow position: | chr28:22827651-22828014 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 4-364 |
| Cow position: | chr28:34593432-34593804 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 5-364 |
| Cow position: | chr28:6780737-6780365 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 5-364 |
| Cow position: | chr28:29819161-29819533 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 6-364 |
| Cow position: | chr28:21358613-21358973 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 10-364 |
| Cow position: | chr28:12149916-12150275 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 16-364 |
| Cow position: | chr28:5812314-5812672 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 17-328 |
| Cow position: | chr28:13522331-13522653 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 17-365 |
| Cow position: | chr28:5796428-5796781 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 18-364 |
| Cow position: | chr28:2591526-2591879 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 18-364 |
| Cow position: | chr28:15681496-15681852 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 20-361 |
| Cow position: | chr28:1387785-1387433 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 21-332 |
| Cow position: | chr28:21325400-21325719 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 21-364 |
| Cow position: | chr28:9953740-9954101 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 312 |
| Conread position: | 23-168 |
| Cow position: | chr28:24667222-24667366 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 25-201 |
| Cow position: | chr28:489100-489285 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-359 |
| Cow position: | chr28:15950591-15950941 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 25-364 |
| Cow position: | chr28:1952754-1953095 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 13 |
| Conread position: | 25-364 |
| Cow position: | chr28:15920849-15920501 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 29-364 |
| Cow position: | chr28:7900971-7901314 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 30-276 |
| Cow position: | chr28:26007651-26007903 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 35-324 |
| Cow position: | chr28:34324449-34324746 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 114, 21 |
| Conread position: | 38-329 |
| Cow position: | chr28:13441255-13440950 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 38-364 |
| Cow position: | chr28:14750170-14750513 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 40-364 |
| Cow position: | chr28:9155655-9155322 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 60-364 |
| Cow position: | chr28:1815222-1814903 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 172 |
| Conread position: | 65-359 |
| Cow position: | chr28:7821915-7822217 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 93 |
| Conread position: | 77-359 |
| Cow position: | chr28:24587098-24587393 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 88-364 |
| Cow position: | chr28:7001661-7001953 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 116-333 |
| Cow position: | chr28:4381108-4380889 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 157-332 |
| Cow position: | chr28:2846742-2846569 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 179-364 |
| Cow position: | chr28:2989909-2989724 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 114 |
Show alignments to all cow chromosomes.