Cow genome map
Conread name: | rsag032_k21.y1 |
Conread position: | 1-249 |
Cow position: | chr29:45587746-45587489 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 190 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 62, 37 |
Conread position: | 1-332 |
Cow position: | chr29:23975385-23975732 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-356 |
Cow position: | chr29:19623692-19623324 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-356 |
Cow position: | chr29:45459276-45459638 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 27 |
Conread position: | 1-358 |
Cow position: | chr29:19652660-19653033 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-361 |
Cow position: | chr29:38226547-38226929 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr29:48924-48547 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr29:2099398-2099775 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 43 |
Conread position: | 1-364 |
Cow position: | chr29:2841813-2841438 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr29:6266940-6266563 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr29:20250711-20251090 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr29:21246120-21246500 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 37 |
Conread position: | 1-364 |
Cow position: | chr29:25932992-25932614 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr29:39080154-39079775 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr29:40503427-40503048 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr29:43322111-43322490 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 37 |
Conread position: | 2-330 |
Cow position: | chr29:803776-803432 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 238 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 55, 23 |
Conread position: | 2-363 |
Cow position: | chr29:30811104-30811461 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 36 |
Conread position: | 4-360 |
Cow position: | chr29:10824401-10824029 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 38 |
Conread position: | 5-321 |
Cow position: | chr29:9644165-9643840 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 33 |
Conread position: | 5-330 |
Cow position: | chr29:104141-104467 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 33 |
Conread position: | 5-359 |
Cow position: | chr29:13577983-13578344 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 33 |
Conread position: | 5-364 |
Cow position: | chr29:10648689-10648321 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 37 |
Conread position: | 5-364 |
Cow position: | chr29:16109284-16109659 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 261 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 52, 33 |
Conread position: | 5-364 |
Cow position: | chr29:32539367-32539741 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 33 |
Conread position: | 9-361 |
Cow position: | chr29:26165259-26164895 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 29 |
Conread position: | 12-360 |
Cow position: | chr29:15950614-15950257 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 209 |
Conread position: | 15-358 |
Cow position: | chr29:35296464-35296799 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 245 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 45, 23 |
Conread position: | 15-364 |
Cow position: | chr29:32315608-32315971 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 253 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 42, 24 |
Conread position: | 17-332 |
Cow position: | chr29:2750811-2750498 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 232 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 40, 12 |
Conread position: | 17-364 |
Cow position: | chr29:5957171-5957533 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 21 |
Conread position: | 18-332 |
Cow position: | chr29:35196256-35196568 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 22 |
Conread position: | 18-364 |
Cow position: | chr29:10848535-10848178 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 258 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 25, 11 |
Conread position: | 18-364 |
Cow position: | chr29:11048851-11049213 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 22 |
Conread position: | 25-364 |
Cow position: | chr29:15895270-15894920 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 13 |
Conread position: | 25-364 |
Cow position: | chr29:27250757-27250404 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 13 |
Conread position: | 25-364 |
Cow position: | chr29:28061090-28060735 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 13 |
Conread position: | 25-364 |
Cow position: | chr29:31121384-31121736 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 249 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 37, 13 |
Conread position: | 30-364 |
Cow position: | chr29:12796882-12796535 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 10 |
Conread position: | 30-364 |
Cow position: | chr29:21543794-21543434 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 30-364 |
Cow position: | chr29:27041182-27040833 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 35-361 |
Cow position: | chr29:43366406-43366071 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 46 |
Conread position: | 37-364 |
Cow position: | chr29:611026-610682 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 240 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 38-242 |
Cow position: | chr29:14368534-14368749 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 151 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 38-357 |
Cow position: | chr29:14013060-14013395 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 226 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 38-357 |
Cow position: | chr29:14073353-14073016 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 227 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 40-364 |
Cow position: | chr29:16769726-16770059 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 280 |
Conread position: | 45-308 |
Cow position: | chr29:2468344-2468058 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 201 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 83, 0 |
Conread position: | 45-364 |
Cow position: | chr29:16022140-16022460 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 230 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 73, 115 |
Conread position: | 46-364 |
Cow position: | chr29:7840395-7840727 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 0 |
Conread position: | 48-363 |
Cow position: | chr29:1714859-1715175 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 213 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 193, 256 |
Conread position: | 58-364 |
Cow position: | chr29:2689515-2689832 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 0 |
Conread position: | 102-363 |
Cow position: | chr29:32640457-32640708 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 185 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 204, 51 |
Conread position: | 124-364 |
Cow position: | chr29:31180805-31181054 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 180 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 140-363 |
Cow position: | chr29:34609248-34609022 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 169 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 19, 76 |
Conread position: | 143-360 |
Cow position: | chr29:13853317-13853097 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 167 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 103, 61 |
Conread position: | 144-308 |
Cow position: | chr29:42801890-42802055 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 129 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 12, 30 |
Conread position: | 148-364 |
Cow position: | chr29:21427347-21427124 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 162 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 154-308 |
Cow position: | chr29:42650041-42650195 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 122 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 87, 19 |
Conread position: | 180-363 |
Cow position: | chr29:17662661-17662853 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 142 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.