Cow genome map

Conread name: rsag032_k21.y1

Conread position: 1-249
Cow position: chr29:45587746-45587489 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 62, 37

Conread position: 1-332
Cow position: chr29:23975385-23975732 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-356
Cow position: chr29:19623692-19623324 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-356
Cow position: chr29:45459276-45459638 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 27

Conread position: 1-358
Cow position: chr29:19652660-19653033 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-361
Cow position: chr29:38226547-38226929 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr29:48924-48547 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr29:2099398-2099775 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 43

Conread position: 1-364
Cow position: chr29:2841813-2841438 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr29:6266940-6266563 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr29:20250711-20251090 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr29:21246120-21246500 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 37

Conread position: 1-364
Cow position: chr29:25932992-25932614 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr29:39080154-39079775 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr29:40503427-40503048 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr29:43322111-43322490 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 37

Conread position: 2-330
Cow position: chr29:803776-803432 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 238
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 55, 23

Conread position: 2-363
Cow position: chr29:30811104-30811461 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 4-360
Cow position: chr29:10824401-10824029 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 38

Conread position: 5-321
Cow position: chr29:9644165-9643840 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 33

Conread position: 5-330
Cow position: chr29:104141-104467 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 33

Conread position: 5-359
Cow position: chr29:13577983-13578344 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 5-364
Cow position: chr29:10648689-10648321 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 37

Conread position: 5-364
Cow position: chr29:16109284-16109659 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 33

Conread position: 5-364
Cow position: chr29:32539367-32539741 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 9-361
Cow position: chr29:26165259-26164895 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 29

Conread position: 12-360
Cow position: chr29:15950614-15950257 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 209

Conread position: 15-358
Cow position: chr29:35296464-35296799 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 245
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 45, 23

Conread position: 15-364
Cow position: chr29:32315608-32315971 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 42, 24

Conread position: 17-332
Cow position: chr29:2750811-2750498 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 40, 12

Conread position: 17-364
Cow position: chr29:5957171-5957533 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 21

Conread position: 18-332
Cow position: chr29:35196256-35196568 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 18-364
Cow position: chr29:10848535-10848178 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 258
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 25, 11

Conread position: 18-364
Cow position: chr29:11048851-11049213 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 25-364
Cow position: chr29:15895270-15894920 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 13

Conread position: 25-364
Cow position: chr29:27250757-27250404 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 25-364
Cow position: chr29:28061090-28060735 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 25-364
Cow position: chr29:31121384-31121736 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 249
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 37, 13

Conread position: 30-364
Cow position: chr29:12796882-12796535 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 10

Conread position: 30-364
Cow position: chr29:21543794-21543434 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 30-364
Cow position: chr29:27041182-27040833 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 35-361
Cow position: chr29:43366406-43366071 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 46

Conread position: 37-364
Cow position: chr29:611026-610682 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 240
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 30, 0

Conread position: 38-242
Cow position: chr29:14368534-14368749 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 38-357
Cow position: chr29:14013060-14013395 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 226
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 19, 0

Conread position: 38-357
Cow position: chr29:14073353-14073016 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 227
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 19, 0

Conread position: 40-364
Cow position: chr29:16769726-16770059 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 280

Conread position: 45-308
Cow position: chr29:2468344-2468058 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 45-364
Cow position: chr29:16022140-16022460 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 73, 115

Conread position: 46-364
Cow position: chr29:7840395-7840727 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 48-363
Cow position: chr29:1714859-1715175 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 213
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 193, 256

Conread position: 58-364
Cow position: chr29:2689515-2689832 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 102-363
Cow position: chr29:32640457-32640708 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 204, 51

Conread position: 124-364
Cow position: chr29:31180805-31181054 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 36, 0

Conread position: 140-363
Cow position: chr29:34609248-34609022 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 76

Conread position: 143-360
Cow position: chr29:13853317-13853097 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 103, 61

Conread position: 144-308
Cow position: chr29:42801890-42802055 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 30

Conread position: 148-364
Cow position: chr29:21427347-21427124 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 87, 0

Conread position: 154-308
Cow position: chr29:42650041-42650195 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 87, 19

Conread position: 180-363
Cow position: chr29:17662661-17662853 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 0

Show alignments to all cow chromosomes.