Cow genome map

Conread name: rsag032_k21.y1

Conread position: 1-232
Cow position: chr4:57978691-57978931 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 37

Conread position: 1-239
Cow position: chr4:41118401-41118650 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 56, 37

Conread position: 1-247
Cow position: chr4:33074110-33073854 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 56, 37

Conread position: 1-361
Cow position: chr4:1050347-1049970 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 1-364
Cow position: chr4:355190-355563 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 26

Conread position: 1-364
Cow position: chr4:3960870-3961245 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr4:6491072-6490695 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr4:13491847-13492229 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-364
Cow position: chr4:18516170-18516549 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 1-364
Cow position: chr4:24445925-24445546 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr4:25600326-25599965 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 37

Conread position: 1-364
Cow position: chr4:29532440-29532061 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr4:36895648-36896027 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 37

Conread position: 1-364
Cow position: chr4:41330714-41331094 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr4:43320362-43319983 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr4:43880385-43880762 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 15

Conread position: 1-364
Cow position: chr4:45050021-45049645 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 2-361
Cow position: chr4:11383706-11384060 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 254
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 47, 36

Conread position: 4-232
Cow position: chr4:3358001-3358239 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 46, 34

Conread position: 4-364
Cow position: chr4:44724360-44724736 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 34

Conread position: 4-364
Cow position: chr4:48025683-48026051 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 23

Conread position: 5-358
Cow position: chr4:16055872-16056251 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 259
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 52, 33

Conread position: 5-360
Cow position: chr4:33493089-33493461 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 6-362
Cow position: chr4:11394043-11393687 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 153, 19

Conread position: 6-364
Cow position: chr4:12241942-12241566 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 6-364
Cow position: chr4:21338699-21338339 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 14

Conread position: 12-359
Cow position: chr4:528278-528641 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 26

Conread position: 13-363
Cow position: chr4:58883378-58883030 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 244
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 12, 28

Conread position: 15-239
Cow position: chr4:41954083-41954315 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 22

Conread position: 15-329
Cow position: chr4:157816-158130 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 24

Conread position: 15-359
Cow position: chr4:1931332-1930975 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 23

Conread position: 15-364
Cow position: chr4:101640-101276 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 23

Conread position: 15-364
Cow position: chr4:602285-602647 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 28

Conread position: 15-364
Cow position: chr4:6269333-6268975 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 17-332
Cow position: chr4:6449597-6449273 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 40, 21

Conread position: 18-363
Cow position: chr4:47718299-47717954 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 244
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 22

Conread position: 20-364
Cow position: chr4:46663494-46663850 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 18

Conread position: 21-354
Cow position: chr4:1464622-1464287 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 17

Conread position: 21-364
Cow position: chr4:34185557-34185214 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 21-364
Cow position: chr4:54190170-54190508 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 22-364
Cow position: chr4:28830336-28830692 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 16

Conread position: 25-358
Cow position: chr4:47764872-47764523 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr4:3125079-3125429 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 38-364
Cow position: chr4:31668627-31668967 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 194

Conread position: 40-364
Cow position: chr4:66925319-66925658 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 55

Conread position: 42-364
Cow position: chr4:1371674-1371362 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 35

Conread position: 50-364
Cow position: chr4:16359215-16359536 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 51-364
Cow position: chr4:13547351-13547681 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 0

Conread position: 61-359
Cow position: chr4:30308100-30307804 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 171, 80

Conread position: 61-360
Cow position: chr4:27442433-27442739 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 88, 17

Conread position: 69-309
Cow position: chr4:60265445-60265191 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 79, 179

Conread position: 110-364
Cow position: chr4:10408177-10408434 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 6

Conread position: 148-364
Cow position: chr4:18425087-18424867 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 93, 0

Conread position: 153-364
Cow position: chr4:66179552-66179335 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 13, 0

Conread position: 179-364
Cow position: chr4:12608040-12607851 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 69, 16

Conread position: 230-364
Cow position: chr4:11618377-11618511 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 102, 80

Show alignments to all cow chromosomes.