Cow genome map
Conread name: | rsag032_k21.y1 |
Conread position: | 1-232 |
Cow position: | chr4:57978691-57978931 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 172 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-239 |
Cow position: | chr4:41118401-41118650 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 178 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-247 |
Cow position: | chr4:33074110-33073854 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 187 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-361 |
Cow position: | chr4:1050347-1049970 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 0 |
Conread position: | 1-364 |
Cow position: | chr4:355190-355563 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 26 |
Conread position: | 1-364 |
Cow position: | chr4:3960870-3961245 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr4:6491072-6490695 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr4:13491847-13492229 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 1-364 |
Cow position: | chr4:18516170-18516549 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 41 |
Conread position: | 1-364 |
Cow position: | chr4:24445925-24445546 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr4:25600326-25599965 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 37 |
Conread position: | 1-364 |
Cow position: | chr4:29532440-29532061 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr4:36895648-36896027 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 37 |
Conread position: | 1-364 |
Cow position: | chr4:41330714-41331094 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr4:43320362-43319983 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr4:43880385-43880762 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 15 |
Conread position: | 1-364 |
Cow position: | chr4:45050021-45049645 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 2-361 |
Cow position: | chr4:11383706-11384060 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 254 |
Alignm E-value: | 7.00649e-43 |
Alignm gaps (pig, cow): | 47, 36 |
Conread position: | 4-232 |
Cow position: | chr4:3358001-3358239 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 175 |
Alignm E-value: | 8e-33 |
Alignm gaps (pig, cow): | 46, 34 |
Conread position: | 4-364 |
Cow position: | chr4:44724360-44724736 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 34 |
Conread position: | 4-364 |
Cow position: | chr4:48025683-48026051 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 23 |
Conread position: | 5-358 |
Cow position: | chr4:16055872-16056251 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 259 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 52, 33 |
Conread position: | 5-360 |
Cow position: | chr4:33493089-33493461 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 22 |
Conread position: | 6-362 |
Cow position: | chr4:11394043-11393687 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 239 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 153, 19 |
Conread position: | 6-364 |
Cow position: | chr4:12241942-12241566 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 33 |
Conread position: | 6-364 |
Cow position: | chr4:21338699-21338339 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 14 |
Conread position: | 12-359 |
Cow position: | chr4:528278-528641 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 26 |
Conread position: | 13-363 |
Cow position: | chr4:58883378-58883030 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 244 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 12, 28 |
Conread position: | 15-239 |
Cow position: | chr4:41954083-41954315 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 163 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 52, 22 |
Conread position: | 15-329 |
Cow position: | chr4:157816-158130 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 24 |
Conread position: | 15-359 |
Cow position: | chr4:1931332-1930975 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 255 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 42, 23 |
Conread position: | 15-364 |
Cow position: | chr4:101640-101276 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 23 |
Conread position: | 15-364 |
Cow position: | chr4:602285-602647 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 28 |
Conread position: | 15-364 |
Cow position: | chr4:6269333-6268975 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 23 |
Conread position: | 17-332 |
Cow position: | chr4:6449597-6449273 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 228 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 40, 21 |
Conread position: | 18-363 |
Cow position: | chr4:47718299-47717954 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 244 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 39, 22 |
Conread position: | 20-364 |
Cow position: | chr4:46663494-46663850 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 18 |
Conread position: | 21-354 |
Cow position: | chr4:1464622-1464287 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 17 |
Conread position: | 21-364 |
Cow position: | chr4:34185557-34185214 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 17 |
Conread position: | 21-364 |
Cow position: | chr4:54190170-54190508 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 17 |
Conread position: | 22-364 |
Cow position: | chr4:28830336-28830692 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 16 |
Conread position: | 25-358 |
Cow position: | chr4:47764872-47764523 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-359 |
Cow position: | chr4:3125079-3125429 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 38-364 |
Cow position: | chr4:31668627-31668967 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 194 |
Conread position: | 40-364 |
Cow position: | chr4:66925319-66925658 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 55 |
Conread position: | 42-364 |
Cow position: | chr4:1371674-1371362 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 35 |
Conread position: | 50-364 |
Cow position: | chr4:16359215-16359536 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 46 |
Conread position: | 51-364 |
Cow position: | chr4:13547351-13547681 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 235 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 61-359 |
Cow position: | chr4:30308100-30307804 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 219 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 171, 80 |
Conread position: | 61-360 |
Cow position: | chr4:27442433-27442739 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 218 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 88, 17 |
Conread position: | 69-309 |
Cow position: | chr4:60265445-60265191 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 183 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 79, 179 |
Conread position: | 110-364 |
Cow position: | chr4:10408177-10408434 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 6 |
Conread position: | 148-364 |
Cow position: | chr4:18425087-18424867 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 161 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 93, 0 |
Conread position: | 153-364 |
Cow position: | chr4:66179552-66179335 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 167 |
Alignm E-value: | 6.99949e-42 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 179-364 |
Cow position: | chr4:12608040-12607851 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 147 |
Alignm E-value: | 6e-31 |
Alignm gaps (pig, cow): | 69, 16 |
Conread position: | 230-364 |
Cow position: | chr4:11618377-11618511 (view UCSC Genome Browser custom track) |
Alignm length: | 137 |
Alignm identity: | 109 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 102, 80 |
Show alignments to all cow chromosomes.