Cow genome map

Conread name: rsag032_k21.y1

Conread position: 1-332
Cow position: chr5:54793249-54792905 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 37

Conread position: 1-332
Cow position: chr5:59282131-59282475 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-347
Cow position: chr5:7273235-7273587 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-360
Cow position: chr5:3504873-3504503 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-360
Cow position: chr5:37731714-37732089 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-361
Cow position: chr5:2913819-2914195 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr5:1342427-1342046 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr5:2430763-2430385 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr5:3785180-3785551 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr5:24098015-24098396 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 42

Conread position: 1-364
Cow position: chr5:49119909-49119534 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 1-364
Cow position: chr5:55627373-55627739 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr5:64782644-64782271 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 26

Conread position: 2-304
Cow position: chr5:46631042-46630740 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 4-364
Cow position: chr5:30578697-30579070 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 34

Conread position: 4-364
Cow position: chr5:34695956-34696332 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 263
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 57, 34

Conread position: 4-364
Cow position: chr5:46739210-46738837 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 34

Conread position: 4-364
Cow position: chr5:48809340-48808968 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 12

Conread position: 5-359
Cow position: chr5:4019825-4019456 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 33

Conread position: 5-359
Cow position: chr5:27909895-27909528 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 5-364
Cow position: chr5:32771855-32772229 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 33

Conread position: 6-364
Cow position: chr5:10918171-10918545 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 37

Conread position: 6-364
Cow position: chr5:57483174-57482799 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 9-364
Cow position: chr5:32945257-32945622 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 29

Conread position: 14-364
Cow position: chr5:28030875-28031230 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 14-364
Cow position: chr5:45699663-45700031 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 15-271
Cow position: chr5:10443818-10443555 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 45, 23

Conread position: 15-299
Cow position: chr5:10776865-10776573 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 45, 23

Conread position: 15-359
Cow position: chr5:10844492-10844132 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 23

Conread position: 15-364
Cow position: chr5:58195386-58195749 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 45, 23

Conread position: 16-225
Cow position: chr5:23688087-23687868 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 21

Conread position: 16-248
Cow position: chr5:41963546-41963305 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 42, 23

Conread position: 16-294
Cow position: chr5:58747276-58747559 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 22

Conread position: 16-364
Cow position: chr5:49594071-49593709 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 22

Conread position: 17-308
Cow position: chr5:6519285-6519575 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 12

Conread position: 17-364
Cow position: chr5:4384616-4384974 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 44, 10

Conread position: 17-364
Cow position: chr5:23716560-23716201 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 21

Conread position: 17-364
Cow position: chr5:32674343-32673995 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 21

Conread position: 18-364
Cow position: chr5:49181672-49182023 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 22

Conread position: 20-361
Cow position: chr5:51162305-51162659 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 37, 18

Conread position: 20-364
Cow position: chr5:39165413-39165050 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 20-364
Cow position: chr5:61273777-61273434 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 233

Conread position: 21-358
Cow position: chr5:61020448-61020107 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 222
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 97, 17

Conread position: 21-362
Cow position: chr5:52804723-52805076 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 21-364
Cow position: chr5:27569550-27569902 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 19, 80

Conread position: 21-364
Cow position: chr5:32733855-32733505 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 304

Conread position: 22-249
Cow position: chr5:54619862-54620093 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 16

Conread position: 23-364
Cow position: chr5:12682110-12681765 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 15

Conread position: 23-364
Cow position: chr5:76124159-76123804 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 234
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 16

Conread position: 24-363
Cow position: chr5:27683352-27683023 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 243
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 25, 14

Conread position: 25-278
Cow position: chr5:23960715-23960451 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 32, 13

Conread position: 25-329
Cow position: chr5:18663640-18663957 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 191
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 13

Conread position: 25-329
Cow position: chr5:46775485-46775798 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 32, 13

Conread position: 25-358
Cow position: chr5:24576306-24576655 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr5:26079825-26079476 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 13

Conread position: 25-359
Cow position: chr5:48468882-48468534 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 13

Conread position: 25-359
Cow position: chr5:59060012-59060363 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 18

Conread position: 25-364
Cow position: chr5:2530669-2531018 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 13

Conread position: 25-364
Cow position: chr5:3963870-3964218 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 13

Conread position: 25-364
Cow position: chr5:18665354-18665709 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr5:35299456-35299811 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr5:46663398-46663746 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 14

Conread position: 29-364
Cow position: chr5:34202349-34202687 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 11

Conread position: 30-358
Cow position: chr5:41551526-41551186 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 29

Conread position: 30-364
Cow position: chr5:29008756-29009107 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 30-364
Cow position: chr5:45182700-45182362 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 210

Conread position: 31-332
Cow position: chr5:9687008-9686701 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 9

Conread position: 31-363
Cow position: chr5:23227659-23228002 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 7

Conread position: 31-364
Cow position: chr5:24329693-24330046 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 38-359
Cow position: chr5:14379574-14379905 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 38-359
Cow position: chr5:31705982-31706318 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 38-359
Cow position: chr5:53714661-53714996 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 38-364
Cow position: chr5:26090424-26090081 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 52

Conread position: 38-365
Cow position: chr5:41530165-41529823 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 40-364
Cow position: chr5:26769220-26769558 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 155

Conread position: 45-357
Cow position: chr5:16104352-16104030 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 208
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 302

Conread position: 65-321
Cow position: chr5:12185093-12185362 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 85, 0

Conread position: 73-364
Cow position: chr5:31102152-31101848 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 78, 0

Conread position: 98-267
Cow position: chr5:33345057-33344895 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 40

Conread position: 132-364
Cow position: chr5:46659234-46659479 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 103, 7

Conread position: 137-276
Cow position: chr5:27652477-27652338 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 21, 49

Conread position: 143-359
Cow position: chr5:54932700-54932475 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 15, 0

Conread position: 143-364
Cow position: chr5:46005864-46005636 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 108, 0

Conread position: 164-303
Cow position: chr5:57976891-57977038 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 175-364
Cow position: chr5:25207187-25206995 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 66, 0

Conread position: 242-364
Cow position: chr5:41962612-41962491 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 89, 75

Show alignments to all cow chromosomes.