Cow genome map
Conread name: | rsag032_k21.y1 |
Conread position: | 1-332 |
Cow position: | chr5:54793249-54792905 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 37 |
Conread position: | 1-332 |
Cow position: | chr5:59282131-59282475 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-347 |
Cow position: | chr5:7273235-7273587 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-360 |
Cow position: | chr5:3504873-3504503 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-360 |
Cow position: | chr5:37731714-37732089 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-361 |
Cow position: | chr5:2913819-2914195 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr5:1342427-1342046 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr5:2430763-2430385 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr5:3785180-3785551 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr5:24098015-24098396 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 42 |
Conread position: | 1-364 |
Cow position: | chr5:49119909-49119534 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 41 |
Conread position: | 1-364 |
Cow position: | chr5:55627373-55627739 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 37 |
Conread position: | 1-364 |
Cow position: | chr5:64782644-64782271 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 26 |
Conread position: | 2-304 |
Cow position: | chr5:46631042-46630740 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 36 |
Conread position: | 4-364 |
Cow position: | chr5:30578697-30579070 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 34 |
Conread position: | 4-364 |
Cow position: | chr5:34695956-34696332 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 263 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 57, 34 |
Conread position: | 4-364 |
Cow position: | chr5:46739210-46738837 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 34 |
Conread position: | 4-364 |
Cow position: | chr5:48809340-48808968 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 12 |
Conread position: | 5-359 |
Cow position: | chr5:4019825-4019456 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 33 |
Conread position: | 5-359 |
Cow position: | chr5:27909895-27909528 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 33 |
Conread position: | 5-364 |
Cow position: | chr5:32771855-32772229 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 33 |
Conread position: | 6-364 |
Cow position: | chr5:10918171-10918545 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 37 |
Conread position: | 6-364 |
Cow position: | chr5:57483174-57482799 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 17 |
Conread position: | 9-364 |
Cow position: | chr5:32945257-32945622 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 29 |
Conread position: | 14-364 |
Cow position: | chr5:28030875-28031230 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 26 |
Conread position: | 14-364 |
Cow position: | chr5:45699663-45700031 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 26 |
Conread position: | 15-271 |
Cow position: | chr5:10443818-10443555 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 185 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 45, 23 |
Conread position: | 15-299 |
Cow position: | chr5:10776865-10776573 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 219 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 45, 23 |
Conread position: | 15-359 |
Cow position: | chr5:10844492-10844132 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 23 |
Conread position: | 15-364 |
Cow position: | chr5:58195386-58195749 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 259 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 45, 23 |
Conread position: | 16-225 |
Cow position: | chr5:23688087-23687868 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 158 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 42, 21 |
Conread position: | 16-248 |
Cow position: | chr5:41963546-41963305 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 177 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 42, 23 |
Conread position: | 16-294 |
Cow position: | chr5:58747276-58747559 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 210 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 41, 22 |
Conread position: | 16-364 |
Cow position: | chr5:49594071-49593709 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 22 |
Conread position: | 17-308 |
Cow position: | chr5:6519285-6519575 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 12 |
Conread position: | 17-364 |
Cow position: | chr5:4384616-4384974 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 258 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 44, 10 |
Conread position: | 17-364 |
Cow position: | chr5:23716560-23716201 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 21 |
Conread position: | 17-364 |
Cow position: | chr5:32674343-32673995 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 21 |
Conread position: | 18-364 |
Cow position: | chr5:49181672-49182023 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 22 |
Conread position: | 20-361 |
Cow position: | chr5:51162305-51162659 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 236 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 37, 18 |
Conread position: | 20-364 |
Cow position: | chr5:39165413-39165050 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 20-364 |
Cow position: | chr5:61273777-61273434 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 233 |
Conread position: | 21-358 |
Cow position: | chr5:61020448-61020107 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 222 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 97, 17 |
Conread position: | 21-362 |
Cow position: | chr5:52804723-52805076 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 19 |
Conread position: | 21-364 |
Cow position: | chr5:27569550-27569902 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 255 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 19, 80 |
Conread position: | 21-364 |
Cow position: | chr5:32733855-32733505 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 304 |
Conread position: | 22-249 |
Cow position: | chr5:54619862-54620093 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 158 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 28, 16 |
Conread position: | 23-364 |
Cow position: | chr5:12682110-12681765 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 15 |
Conread position: | 23-364 |
Cow position: | chr5:76124159-76123804 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 234 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 38, 16 |
Conread position: | 24-363 |
Cow position: | chr5:27683352-27683023 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 243 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 25, 14 |
Conread position: | 25-278 |
Cow position: | chr5:23960715-23960451 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 191 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-329 |
Cow position: | chr5:18663640-18663957 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 191 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-329 |
Cow position: | chr5:46775485-46775798 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 221 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-358 |
Cow position: | chr5:24576306-24576655 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-359 |
Cow position: | chr5:26079825-26079476 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 13 |
Conread position: | 25-359 |
Cow position: | chr5:48468882-48468534 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 13 |
Conread position: | 25-359 |
Cow position: | chr5:59060012-59060363 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 250 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 32, 18 |
Conread position: | 25-364 |
Cow position: | chr5:2530669-2531018 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 13 |
Conread position: | 25-364 |
Cow position: | chr5:3963870-3964218 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 13 |
Conread position: | 25-364 |
Cow position: | chr5:18665354-18665709 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-364 |
Cow position: | chr5:35299456-35299811 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 13 |
Conread position: | 25-364 |
Cow position: | chr5:46663398-46663746 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 14 |
Conread position: | 29-364 |
Cow position: | chr5:34202349-34202687 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 11 |
Conread position: | 30-358 |
Cow position: | chr5:41551526-41551186 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 29 |
Conread position: | 30-364 |
Cow position: | chr5:29008756-29009107 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 30-364 |
Cow position: | chr5:45182700-45182362 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 210 |
Conread position: | 31-332 |
Cow position: | chr5:9687008-9686701 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 9 |
Conread position: | 31-363 |
Cow position: | chr5:23227659-23228002 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 7 |
Conread position: | 31-364 |
Cow position: | chr5:24329693-24330046 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 9 |
Conread position: | 38-359 |
Cow position: | chr5:14379574-14379905 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 38-359 |
Cow position: | chr5:31705982-31706318 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 237 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 38-359 |
Cow position: | chr5:53714661-53714996 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 38-364 |
Cow position: | chr5:26090424-26090081 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 246 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 19, 52 |
Conread position: | 38-365 |
Cow position: | chr5:41530165-41529823 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 40-364 |
Cow position: | chr5:26769220-26769558 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 155 |
Conread position: | 45-357 |
Cow position: | chr5:16104352-16104030 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 208 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 16, 302 |
Conread position: | 65-321 |
Cow position: | chr5:12185093-12185362 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 199 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 85, 0 |
Conread position: | 73-364 |
Cow position: | chr5:31102152-31101848 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 215 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 78, 0 |
Conread position: | 98-267 |
Cow position: | chr5:33345057-33344895 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 130 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 14, 40 |
Conread position: | 132-364 |
Cow position: | chr5:46659234-46659479 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 180 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 103, 7 |
Conread position: | 137-276 |
Cow position: | chr5:27652477-27652338 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 113 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 21, 49 |
Conread position: | 143-359 |
Cow position: | chr5:54932700-54932475 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 172 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 143-364 |
Cow position: | chr5:46005864-46005636 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 167 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 164-303 |
Cow position: | chr5:57976891-57977038 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 113 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 77, 0 |
Conread position: | 175-364 |
Cow position: | chr5:25207187-25206995 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 150 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 66, 0 |
Conread position: | 242-364 |
Cow position: | chr5:41962612-41962491 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 102 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 89, 75 |
Show alignments to all cow chromosomes.