Cow genome map

Conread name: rsag032_k21.y1

Conread position: 1-277
Cow position: chr6:24238562-24238847 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 56, 26

Conread position: 1-360
Cow position: chr6:15281032-15280657 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-360
Cow position: chr6:21686412-21686773 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 26

Conread position: 1-360
Cow position: chr6:21971188-21971559 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-360
Cow position: chr6:65841100-65841480 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 266
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 56, 37

Conread position: 1-362
Cow position: chr6:38231790-38232163 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:1823735-1823360 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:3278439-3278061 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:3889976-3889590 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:8201243-8201621 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:17045574-17045948 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:20561598-20561220 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 37

Conread position: 1-364
Cow position: chr6:29311005-29311380 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 37

Conread position: 1-364
Cow position: chr6:34893496-34893120 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:36525556-36525932 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:50497939-50497569 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 1-364
Cow position: chr6:64713061-64713431 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 32, 15

Conread position: 1-364
Cow position: chr6:64714628-64715005 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 15

Conread position: 1-365
Cow position: chr6:55544816-55544436 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 2-332
Cow position: chr6:2885757-2886077 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 2-362
Cow position: chr6:59919761-59919391 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 14

Conread position: 2-364
Cow position: chr6:913144-913518 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 2-364
Cow position: chr6:39437156-39437530 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 2-364
Cow position: chr6:65900397-65900029 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 59, 36

Conread position: 3-363
Cow position: chr6:6476937-6476566 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 35

Conread position: 4-360
Cow position: chr6:65908947-65909312 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 34

Conread position: 4-364
Cow position: chr6:3488878-3488511 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 34

Conread position: 4-364
Cow position: chr6:5951721-5951347 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 23

Conread position: 5-227
Cow position: chr6:52735919-52736147 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 33

Conread position: 5-364
Cow position: chr6:6566127-6566502 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 5-364
Cow position: chr6:12093338-12092973 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 5-364
Cow position: chr6:30478614-30478980 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 33

Conread position: 5-364
Cow position: chr6:43617230-43617606 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 6-364
Cow position: chr6:2554220-2554597 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 6-364
Cow position: chr6:15141661-15141286 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 17

Conread position: 6-364
Cow position: chr6:30275666-30275289 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 7-364
Cow position: chr6:27468776-27469141 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 16

Conread position: 10-359
Cow position: chr6:26671337-26670979 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 15

Conread position: 13-311
Cow position: chr6:51190072-51190373 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 196
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 25

Conread position: 13-360
Cow position: chr6:701473-701840 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 15-358
Cow position: chr6:68026306-68026665 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 22

Conread position: 15-359
Cow position: chr6:7141940-7141587 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 23

Conread position: 15-359
Cow position: chr6:17598757-17598395 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 23

Conread position: 15-362
Cow position: chr6:48367955-48368279 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 120, 23

Conread position: 15-364
Cow position: chr6:13103584-13103947 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 254
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 42, 23

Conread position: 15-364
Cow position: chr6:28062873-28063227 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 23

Conread position: 15-364
Cow position: chr6:39907681-39908039 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 16-364
Cow position: chr6:10054150-10054502 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 22

Conread position: 16-364
Cow position: chr6:40314439-40314791 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 22

Conread position: 17-233
Cow position: chr6:28106238-28106016 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 21

Conread position: 17-303
Cow position: chr6:7180135-7179853 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 10

Conread position: 17-333
Cow position: chr6:42360139-42359824 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 213
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 231, 22

Conread position: 17-364
Cow position: chr6:27530472-27530114 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 21

Conread position: 18-364
Cow position: chr6:65007373-65007725 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 18-364
Cow position: chr6:68362787-68362430 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 25-329
Cow position: chr6:27169111-27169428 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 32, 13

Conread position: 25-329
Cow position: chr6:28491979-28491662 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 25-358
Cow position: chr6:57870469-57870120 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr6:1405697-1405352 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-359
Cow position: chr6:34126886-34127233 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr6:2374246-2374593 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr6:13978078-13978410 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr6:40274794-40275148 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr6:44028590-44028937 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 248
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 32, 13

Conread position: 25-364
Cow position: chr6:65822597-65822237 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 35, 13

Conread position: 29-305
Cow position: chr6:60384534-60384815 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 183
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 113, 256

Conread position: 29-364
Cow position: chr6:35421023-35420693 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 47

Conread position: 30-332
Cow position: chr6:63198596-63198289 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 203
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 26, 13

Conread position: 30-364
Cow position: chr6:42926919-42927273 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 16

Conread position: 31-363
Cow position: chr6:19453474-19453811 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 13

Conread position: 32-330
Cow position: chr6:66231356-66231656 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 216

Conread position: 34-361
Cow position: chr6:2955408-2955069 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 216
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 183

Conread position: 35-360
Cow position: chr6:42723376-42723039 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 170

Conread position: 38-247
Cow position: chr6:33459127-33459352 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 144

Conread position: 38-333
Cow position: chr6:11353285-11353597 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 206
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 18

Conread position: 38-364
Cow position: chr6:13943460-13943800 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 65

Conread position: 38-364
Cow position: chr6:28274535-28274873 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 186

Conread position: 38-364
Cow position: chr6:65927492-65927826 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 39-364
Cow position: chr6:58409360-58409023 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 242

Conread position: 40-332
Cow position: chr6:11278144-11277846 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 58

Conread position: 40-361
Cow position: chr6:42564496-42564830 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 216
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 18, 64

Conread position: 40-364
Cow position: chr6:65880415-65880756 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 47-364
Cow position: chr6:8761744-8761411 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 56-364
Cow position: chr6:10559072-10558770 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 108, 38

Conread position: 126-360
Cow position: chr6:40554944-40554707 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 107

Conread position: 132-364
Cow position: chr6:37115788-37116028 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 29, 21

Conread position: 164-364
Cow position: chr6:33388519-33388723 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 189-360
Cow position: chr6:13317776-13317600 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 205-364
Cow position: chr6:49520667-49520510 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 127, 24

Show alignments to all cow chromosomes.