Cow genome map
| Conread name: | rsag032_k21.y1 |
| Conread position: | 1-247 |
| Cow position: | chr7:13538127-13537871 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-332 |
| Cow position: | chr7:38396827-38397165 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-360 |
| Cow position: | chr7:39791337-39791715 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-361 |
| Cow position: | chr7:14139992-14139620 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 1-364 |
| Cow position: | chr7:447019-446652 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 26 |
| Conread position: | 1-364 |
| Cow position: | chr7:1373049-1372673 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr7:3154385-3154759 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 1-364 |
| Cow position: | chr7:21235410-21235032 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 1-364 |
| Cow position: | chr7:21985000-21985378 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 1-364 |
| Cow position: | chr7:24808868-24808488 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr7:27786232-27786603 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr7:34485515-34485887 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 1-364 |
| Cow position: | chr7:35287962-35287581 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 1-364 |
| Cow position: | chr7:46902473-46902097 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 1-364 |
| Cow position: | chr7:54602450-54602830 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 2-361 |
| Cow position: | chr7:58378587-58378216 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 2-364 |
| Cow position: | chr7:60857746-60857391 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 2-364 |
| Cow position: | chr7:63020458-63020832 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 36 |
| Conread position: | 3-364 |
| Cow position: | chr7:55538314-55537938 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 4-364 |
| Cow position: | chr7:67798458-67798829 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 34 |
| Conread position: | 5-209 |
| Cow position: | chr7:30156684-30156471 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 5-353 |
| Cow position: | chr7:41876873-41876527 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 5-360 |
| Cow position: | chr7:25439139-25439494 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 5-364 |
| Cow position: | chr7:20799812-20799463 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 6-156 |
| Cow position: | chr7:68779251-68779102 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 6-332 |
| Cow position: | chr7:1400750-1400417 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 6-364 |
| Cow position: | chr7:21128046-21127678 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 11-364 |
| Cow position: | chr7:53990374-53990722 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 9 |
| Conread position: | 13-361 |
| Cow position: | chr7:20307172-20306816 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 13-364 |
| Cow position: | chr7:27143953-27144306 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 15-359 |
| Cow position: | chr7:27102496-27102140 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 16-363 |
| Cow position: | chr7:39109094-39108751 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 16-364 |
| Cow position: | chr7:26883760-26884109 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 16-364 |
| Cow position: | chr7:48633024-48633375 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 18-359 |
| Cow position: | chr7:37416636-37416987 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 21, 236 |
| Conread position: | 20-222 |
| Cow position: | chr7:47050043-47050251 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 20-360 |
| Cow position: | chr7:55281178-55280829 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 20-364 |
| Cow position: | chr7:26890426-26890780 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 20-364 |
| Cow position: | chr7:51013595-51013948 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 22-290 |
| Cow position: | chr7:25686584-25686312 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 23-364 |
| Cow position: | chr7:21309846-21310188 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 25-250 |
| Cow position: | chr7:6720172-6720404 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-359 |
| Cow position: | chr7:3301529-3301180 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-360 |
| Cow position: | chr7:54515484-54515145 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 133 |
| Conread position: | 25-364 |
| Cow position: | chr7:17248-16893 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 25-364 |
| Cow position: | chr7:3235058-3234704 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 25-364 |
| Cow position: | chr7:6643248-6642899 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-364 |
| Cow position: | chr7:11467103-11466758 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 26-271 |
| Cow position: | chr7:20106912-20106676 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 30-335 |
| Cow position: | chr7:41870300-41869982 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 30-364 |
| Cow position: | chr7:67416674-67417022 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 31-303 |
| Cow position: | chr7:35297964-35297683 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 32-357 |
| Cow position: | chr7:68858462-68858123 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 86 |
| Conread position: | 37-364 |
| Cow position: | chr7:68436406-68436066 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 8 |
| Conread position: | 38-285 |
| Cow position: | chr7:68076178-68076434 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 38-315 |
| Cow position: | chr7:20294508-20294799 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 38-359 |
| Cow position: | chr7:6649017-6648681 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 38-359 |
| Cow position: | chr7:61558849-61559187 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 18 |
| Conread position: | 38-364 |
| Cow position: | chr7:522205-521865 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 19 |
| Conread position: | 38-364 |
| Cow position: | chr7:1449131-1449464 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 201 |
| Conread position: | 38-364 |
| Cow position: | chr7:26025683-26026018 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 5 |
| Conread position: | 40-364 |
| Cow position: | chr7:52120441-52120100 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 44-364 |
| Cow position: | chr7:993877-994215 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 47-364 |
| Cow position: | chr7:1358028-1357702 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 265 |
| Conread position: | 47-364 |
| Cow position: | chr7:21976088-21975758 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 9 |
| Conread position: | 48-364 |
| Cow position: | chr7:38536167-38536497 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 57-364 |
| Cow position: | chr7:41489793-41490096 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 26 |
| Conread position: | 60-358 |
| Cow position: | chr7:45949488-45949176 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 61-364 |
| Cow position: | chr7:51911691-51911374 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 222 |
| Conread position: | 65-364 |
| Cow position: | chr7:11446221-11446535 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 122-360 |
| Cow position: | chr7:6489580-6489335 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 128-364 |
| Cow position: | chr7:26893486-26893729 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 139-364 |
| Cow position: | chr7:5662123-5662359 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 139-364 |
| Cow position: | chr7:67426163-67426396 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 148-356 |
| Cow position: | chr7:1611446-1611237 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 184-364 |
| Cow position: | chr7:20528882-20528696 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 184-364 |
| Cow position: | chr7:20555510-20555693 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 205-364 |
| Cow position: | chr7:21241979-21241817 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 219-360 |
| Cow position: | chr7:24421664-24421807 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 231-364 |
| Cow position: | chr7:47050545-47050680 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.