Cow genome map
| Conread name: | rsag032_k21.y1 |
| Conread position: | 1-204 |
| Cow position: | chr9:10855639-10855852 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 1-332 |
| Cow position: | chr9:5003453-5003796 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-353 |
| Cow position: | chr9:10321261-10321630 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-360 |
| Cow position: | chr9:31806980-31807348 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:1996476-1996094 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:7001994-7002371 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:16175208-16175586 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:27034150-27034525 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 1-364 |
| Cow position: | chr9:28020987-28021366 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 1-364 |
| Cow position: | chr9:29629307-29628928 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 1-364 |
| Cow position: | chr9:37163367-37162989 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:42309122-42309501 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 307 |
| Conread position: | 1-364 |
| Cow position: | chr9:42568313-42568689 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:47001653-47002020 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 1-364 |
| Cow position: | chr9:51183268-51182883 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:59456159-59455780 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:59483224-59482854 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 37 |
| Conread position: | 1-364 |
| Cow position: | chr9:60278583-60278203 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 2-308 |
| Cow position: | chr9:3868058-3867744 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 147, 36 |
| Conread position: | 2-332 |
| Cow position: | chr9:18836224-18836562 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 2-364 |
| Cow position: | chr9:37971765-37971388 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 4-360 |
| Cow position: | chr9:418088-417716 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 4-360 |
| Cow position: | chr9:3548727-3548358 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 5-280 |
| Cow position: | chr9:2629968-2630249 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 144, 18 |
| Conread position: | 5-287 |
| Cow position: | chr9:3006828-3006535 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 5-359 |
| Cow position: | chr9:2488519-2488158 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 5-364 |
| Cow position: | chr9:223086-222730 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 140, 33 |
| Conread position: | 5-364 |
| Cow position: | chr9:2170502-2170874 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 5-364 |
| Cow position: | chr9:17064942-17064579 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 5-364 |
| Cow position: | chr9:30671815-30672187 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 5-364 |
| Cow position: | chr9:59174713-59174338 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 6-364 |
| Cow position: | chr9:59535543-59535916 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 10-364 |
| Cow position: | chr9:60652012-60651649 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 13-330 |
| Cow position: | chr9:64118309-64118613 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 13-364 |
| Cow position: | chr9:4984232-4984587 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 13-364 |
| Cow position: | chr9:54360067-54360420 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 27 |
| Conread position: | 15-359 |
| Cow position: | chr9:27933548-27933908 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 15-364 |
| Cow position: | chr9:4672061-4672426 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 15-364 |
| Cow position: | chr9:34243144-34242779 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 16-364 |
| Cow position: | chr9:830097-829741 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 16-364 |
| Cow position: | chr9:831971-831615 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 18-249 |
| Cow position: | chr9:651634-651390 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 115, 7 |
| Conread position: | 18-266 |
| Cow position: | chr9:3585760-3586020 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 18-364 |
| Cow position: | chr9:2500838-2500477 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 18-364 |
| Cow position: | chr9:31020263-31020627 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 20-363 |
| Cow position: | chr9:20310250-20309914 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 224, 19 |
| Conread position: | 20-364 |
| Cow position: | chr9:6051580-6051231 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 21-364 |
| Cow position: | chr9:2199570-2199925 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 206 |
| Conread position: | 21-364 |
| Cow position: | chr9:3155503-3155851 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 144 |
| Conread position: | 21-364 |
| Cow position: | chr9:13219807-13220140 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 25-271 |
| Cow position: | chr9:12401710-12401967 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 25-286 |
| Cow position: | chr9:33834809-33834535 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-286 |
| Cow position: | chr9:50789035-50789304 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-316 |
| Cow position: | chr9:25755739-25755438 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-358 |
| Cow position: | chr9:45872818-45873161 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 25-359 |
| Cow position: | chr9:16267825-16268175 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-359 |
| Cow position: | chr9:25483336-25483687 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 25-359 |
| Cow position: | chr9:31194703-31194353 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 25-364 |
| Cow position: | chr9:46626335-46625980 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 30-364 |
| Cow position: | chr9:28626562-28626222 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 258 |
| Conread position: | 30-364 |
| Cow position: | chr9:37130075-37129718 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 261 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 10, 77 |
| Conread position: | 31-328 |
| Cow position: | chr9:6757041-6757352 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 34-364 |
| Cow position: | chr9:15071988-15072335 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 36-331 |
| Cow position: | chr9:2185430-2185744 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 178 |
| Conread position: | 38-360 |
| Cow position: | chr9:59443331-59443667 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 38-364 |
| Cow position: | chr9:28677451-28677794 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 22, 18 |
| Conread position: | 38-364 |
| Cow position: | chr9:36723979-36724320 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 39-361 |
| Cow position: | chr9:12846046-12845718 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 40-364 |
| Cow position: | chr9:1294338-1293997 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 41-364 |
| Cow position: | chr9:7062627-7062274 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 44-360 |
| Cow position: | chr9:34107236-34106905 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 83, 244 |
| Conread position: | 44-363 |
| Cow position: | chr9:793022-792696 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 45-361 |
| Cow position: | chr9:3567370-3567037 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 49-292 |
| Cow position: | chr9:7646713-7646460 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 69, 105 |
| Conread position: | 49-350 |
| Cow position: | chr9:9577093-9577404 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 55-361 |
| Cow position: | chr9:22650649-22650972 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 205 |
| Conread position: | 60-364 |
| Cow position: | chr9:1979446-1979757 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 230 |
| Conread position: | 65-364 |
| Cow position: | chr9:32968244-32968560 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 66-359 |
| Cow position: | chr9:1252462-1252154 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 66-364 |
| Cow position: | chr9:29028724-29028410 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 143-359 |
| Cow position: | chr9:131603-131382 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 94, 143 |
| Conread position: | 148-364 |
| Cow position: | chr9:2697339-2697112 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 177-364 |
| Cow position: | chr9:8969298-8969107 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 179-325 |
| Cow position: | chr9:3356345-3356203 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 239-364 |
| Cow position: | chr9:37064105-37063976 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.