Cow genome map

Conread name: rsag05_b2.y1

Conread position: 1-212
Cow position: chr11:17281281-17281060 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 53, 124

Conread position: 1-333
Cow position: chr11:76372804-76372507 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 273, 18

Conread position: 1-334
Cow position: chr11:1488973-1488648 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 123

Conread position: 1-334
Cow position: chr11:9155952-9155627 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 276, 112

Conread position: 1-334
Cow position: chr11:67154878-67155207 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 122

Conread position: 2-334
Cow position: chr11:10848653-10848968 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 41

Conread position: 2-334
Cow position: chr11:50949127-50948782 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 111

Conread position: 3-194
Cow position: chr11:30122643-30122452 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 160, 66

Conread position: 3-195
Cow position: chr11:71330801-71331001 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 160, 120

Conread position: 3-200
Cow position: chr11:11989334-11989536 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 159
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 160, 88

Conread position: 3-208
Cow position: chr11:57626850-57626637 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 167
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 157, 120

Conread position: 3-209
Cow position: chr11:58135596-58135804 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 133, 97

Conread position: 3-278
Cow position: chr11:66730281-66730551 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 147, 196

Conread position: 3-330
Cow position: chr11:87142783-87143108 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 120

Conread position: 3-331
Cow position: chr11:4026410-4026084 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-333
Cow position: chr11:3261693-3262013 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 145, 59

Conread position: 3-333
Cow position: chr11:27657629-27657966 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 166

Conread position: 3-334
Cow position: chr11:3494191-3494520 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr11:3856407-3856740 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 33

Conread position: 3-334
Cow position: chr11:11590169-11590497 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 60

Conread position: 3-334
Cow position: chr11:12357200-12356871 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr11:15986453-15986773 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 43

Conread position: 3-334
Cow position: chr11:17119142-17118818 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 157

Conread position: 3-334
Cow position: chr11:19062875-19062546 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr11:19101292-19100961 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 120

Conread position: 3-334
Cow position: chr11:23881229-23881553 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 160, 107

Conread position: 3-334
Cow position: chr11:24394516-24394842 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 118

Conread position: 3-334
Cow position: chr11:26548731-26549056 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 97

Conread position: 3-334
Cow position: chr11:28228566-28228238 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr11:29667396-29667064 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 120

Conread position: 3-334
Cow position: chr11:30208334-30208668 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 234
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 160, 11

Conread position: 3-334
Cow position: chr11:30253430-30253754 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 242
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 162, 41

Conread position: 3-334
Cow position: chr11:31927357-31927681 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 13

Conread position: 3-334
Cow position: chr11:32079586-32079257 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr11:32453033-32453362 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 120

Conread position: 3-334
Cow position: chr11:41169494-41169176 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 3-334
Cow position: chr11:47738338-47738017 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 240
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 157, 94

Conread position: 3-334
Cow position: chr11:47759075-47758751 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 260
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 76, 19

Conread position: 3-334
Cow position: chr11:49552950-49552626 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 205, 122

Conread position: 3-334
Cow position: chr11:61399903-61399574 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr11:63654132-63653804 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 120

Conread position: 3-334
Cow position: chr11:67451694-67452023 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr11:67845370-67845041 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 120

Conread position: 3-334
Cow position: chr11:73134505-73134827 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 64

Conread position: 4-209
Cow position: chr11:7117614-7117827 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 156, 119

Conread position: 4-334
Cow position: chr11:23249267-23248939 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 119

Conread position: 5-334
Cow position: chr11:39804927-39805265 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 43, 112

Conread position: 7-209
Cow position: chr11:38834242-38834032 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 156, 121

Conread position: 7-334
Cow position: chr11:72309832-72309509 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 36

Conread position: 8-334
Cow position: chr11:50836461-50836137 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 115

Conread position: 17-334
Cow position: chr11:53285957-53285646 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 106

Conread position: 25-209
Cow position: chr11:43513401-43513213 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 152
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 136, 98

Conread position: 25-334
Cow position: chr11:44582119-44581812 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 98

Conread position: 25-334
Cow position: chr11:53430812-53430502 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 98

Conread position: 33-209
Cow position: chr11:11578514-11578326 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 93

Conread position: 35-334
Cow position: chr11:44155766-44155470 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 128, 88

Conread position: 43-334
Cow position: chr11:4268936-4268636 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 208
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 120, 85

Conread position: 60-332
Cow position: chr11:40405794-40405525 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 103, 63

Conread position: 83-333
Cow position: chr11:12318745-12318497 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 191, 40

Conread position: 113-332
Cow position: chr11:21898372-21898156 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 171, 15

Conread position: 166-334
Cow position: chr11:4034053-4033879 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 109, 15

Conread position: 170-334
Cow position: chr11:21445987-21446161 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 37, 140

Conread position: 205-334
Cow position: chr11:44094228-44094091 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 69, 0

Show alignments to all cow chromosomes.