Cow genome map
Conread name: | rsag05_b2.y1 |
Conread position: | 1-212 |
Cow position: | chr11:17281281-17281060 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 170 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 53, 124 |
Conread position: | 1-333 |
Cow position: | chr11:76372804-76372507 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 236 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 273, 18 |
Conread position: | 1-334 |
Cow position: | chr11:1488973-1488648 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 123 |
Conread position: | 1-334 |
Cow position: | chr11:9155952-9155627 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 246 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 276, 112 |
Conread position: | 1-334 |
Cow position: | chr11:67154878-67155207 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 277, 122 |
Conread position: | 2-334 |
Cow position: | chr11:10848653-10848968 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 247, 41 |
Conread position: | 2-334 |
Cow position: | chr11:50949127-50948782 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 111 |
Conread position: | 3-194 |
Cow position: | chr11:30122643-30122452 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 149 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 160, 66 |
Conread position: | 3-195 |
Cow position: | chr11:71330801-71331001 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 156 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 160, 120 |
Conread position: | 3-200 |
Cow position: | chr11:11989334-11989536 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 159 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 160, 88 |
Conread position: | 3-208 |
Cow position: | chr11:57626850-57626637 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 167 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 157, 120 |
Conread position: | 3-209 |
Cow position: | chr11:58135596-58135804 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 156 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 133, 97 |
Conread position: | 3-278 |
Cow position: | chr11:66730281-66730551 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 218 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 147, 196 |
Conread position: | 3-330 |
Cow position: | chr11:87142783-87143108 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 120 |
Conread position: | 3-331 |
Cow position: | chr11:4026410-4026084 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 120 |
Conread position: | 3-333 |
Cow position: | chr11:3261693-3262013 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 234 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 145, 59 |
Conread position: | 3-333 |
Cow position: | chr11:27657629-27657966 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 166 |
Conread position: | 3-334 |
Cow position: | chr11:3494191-3494520 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 120 |
Conread position: | 3-334 |
Cow position: | chr11:3856407-3856740 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 33 |
Conread position: | 3-334 |
Cow position: | chr11:11590169-11590497 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 60 |
Conread position: | 3-334 |
Cow position: | chr11:12357200-12356871 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 120 |
Conread position: | 3-334 |
Cow position: | chr11:15986453-15986773 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 43 |
Conread position: | 3-334 |
Cow position: | chr11:17119142-17118818 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 157 |
Conread position: | 3-334 |
Cow position: | chr11:19062875-19062546 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 120 |
Conread position: | 3-334 |
Cow position: | chr11:19101292-19100961 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 120 |
Conread position: | 3-334 |
Cow position: | chr11:23881229-23881553 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 238 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 160, 107 |
Conread position: | 3-334 |
Cow position: | chr11:24394516-24394842 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 118 |
Conread position: | 3-334 |
Cow position: | chr11:26548731-26549056 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 97 |
Conread position: | 3-334 |
Cow position: | chr11:28228566-28228238 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 120 |
Conread position: | 3-334 |
Cow position: | chr11:29667396-29667064 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 273, 120 |
Conread position: | 3-334 |
Cow position: | chr11:30208334-30208668 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 234 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 160, 11 |
Conread position: | 3-334 |
Cow position: | chr11:30253430-30253754 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 242 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 162, 41 |
Conread position: | 3-334 |
Cow position: | chr11:31927357-31927681 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 13 |
Conread position: | 3-334 |
Cow position: | chr11:32079586-32079257 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 120 |
Conread position: | 3-334 |
Cow position: | chr11:32453033-32453362 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 120 |
Conread position: | 3-334 |
Cow position: | chr11:41169494-41169176 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 0 |
Conread position: | 3-334 |
Cow position: | chr11:47738338-47738017 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 240 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 157, 94 |
Conread position: | 3-334 |
Cow position: | chr11:47759075-47758751 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 260 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 76, 19 |
Conread position: | 3-334 |
Cow position: | chr11:49552950-49552626 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 232 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 205, 122 |
Conread position: | 3-334 |
Cow position: | chr11:61399903-61399574 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 120 |
Conread position: | 3-334 |
Cow position: | chr11:63654132-63653804 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 226, 120 |
Conread position: | 3-334 |
Cow position: | chr11:67451694-67452023 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 120 |
Conread position: | 3-334 |
Cow position: | chr11:67845370-67845041 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 120 |
Conread position: | 3-334 |
Cow position: | chr11:73134505-73134827 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 64 |
Conread position: | 4-209 |
Cow position: | chr11:7117614-7117827 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 166 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 156, 119 |
Conread position: | 4-334 |
Cow position: | chr11:23249267-23248939 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 270, 119 |
Conread position: | 5-334 |
Cow position: | chr11:39804927-39805265 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 244 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 43, 112 |
Conread position: | 7-209 |
Cow position: | chr11:38834242-38834032 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 163 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 156, 121 |
Conread position: | 7-334 |
Cow position: | chr11:72309832-72309509 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 267, 36 |
Conread position: | 8-334 |
Cow position: | chr11:50836461-50836137 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 115 |
Conread position: | 17-334 |
Cow position: | chr11:53285957-53285646 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 261, 106 |
Conread position: | 25-209 |
Cow position: | chr11:43513401-43513213 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 152 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 136, 98 |
Conread position: | 25-334 |
Cow position: | chr11:44582119-44581812 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 98 |
Conread position: | 25-334 |
Cow position: | chr11:53430812-53430502 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 98 |
Conread position: | 33-209 |
Cow position: | chr11:11578514-11578326 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 148 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 33, 93 |
Conread position: | 35-334 |
Cow position: | chr11:44155766-44155470 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 214 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 128, 88 |
Conread position: | 43-334 |
Cow position: | chr11:4268936-4268636 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 208 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 120, 85 |
Conread position: | 60-332 |
Cow position: | chr11:40405794-40405525 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 196 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 103, 63 |
Conread position: | 83-333 |
Cow position: | chr11:12318745-12318497 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 194 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 191, 40 |
Conread position: | 113-332 |
Cow position: | chr11:21898372-21898156 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 157 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 171, 15 |
Conread position: | 166-334 |
Cow position: | chr11:4034053-4033879 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 130 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 109, 15 |
Conread position: | 170-334 |
Cow position: | chr11:21445987-21446161 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 130 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 37, 140 |
Conread position: | 205-334 |
Cow position: | chr11:44094228-44094091 (view UCSC Genome Browser custom track) |
Alignm length: | 138 |
Alignm identity: | 106 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.