Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-195 |
| Cow position: | chr13:34324311-34324109 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 159, 122 |
| Conread position: | 1-213 |
| Cow position: | chr13:34938705-34938925 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 159, 117 |
| Conread position: | 1-333 |
| Cow position: | chr13:9046021-9046345 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 1-334 |
| Cow position: | chr13:13901135-13901462 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 162, 34 |
| Conread position: | 1-334 |
| Cow position: | chr13:31611044-31610719 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 120 |
| Conread position: | 2-334 |
| Cow position: | chr13:9298714-9299044 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 121 |
| Conread position: | 2-334 |
| Cow position: | chr13:33335047-33334723 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 54 |
| Conread position: | 2-334 |
| Cow position: | chr13:50193127-50192800 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 158, 50 |
| Conread position: | 3-209 |
| Cow position: | chr13:14186271-14186483 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 160, 21 |
| Conread position: | 3-209 |
| Cow position: | chr13:21697533-21697747 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-209 |
| Cow position: | chr13:47575361-47575575 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 156, 120 |
| Conread position: | 3-278 |
| Cow position: | chr13:3653044-3652775 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 120, 204 |
| Conread position: | 3-327 |
| Cow position: | chr13:15449884-15449575 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 44, 126 |
| Conread position: | 3-330 |
| Cow position: | chr13:16253247-16252923 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 3-331 |
| Cow position: | chr13:679020-679342 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 120 |
| Conread position: | 3-331 |
| Cow position: | chr13:11797438-11797112 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-332 |
| Cow position: | chr13:21838938-21838611 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 127 |
| Conread position: | 3-334 |
| Cow position: | chr13:4942654-4942983 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr13:5500730-5500401 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr13:6358393-6358722 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr13:6666870-6666541 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr13:13326196-13326521 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 40 |
| Conread position: | 3-334 |
| Cow position: | chr13:32923867-32923535 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 121 |
| Conread position: | 3-334 |
| Cow position: | chr13:32984075-32983746 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 127 |
| Conread position: | 3-334 |
| Cow position: | chr13:34041065-34040734 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 120 |
| Conread position: | 3-334 |
| Cow position: | chr13:34343175-34343504 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 4-200 |
| Cow position: | chr13:20540986-20540780 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 157, 116 |
| Conread position: | 5-334 |
| Cow position: | chr13:50110724-50111056 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 118 |
| Conread position: | 7-334 |
| Cow position: | chr13:14401835-14401510 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 116 |
| Conread position: | 8-209 |
| Cow position: | chr13:17309737-17309946 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 122 |
| Conread position: | 8-334 |
| Cow position: | chr13:33524682-33524358 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 115 |
| Conread position: | 10-332 |
| Cow position: | chr13:34869248-34869567 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 113 |
| Conread position: | 10-334 |
| Cow position: | chr13:49494904-49494581 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 17-333 |
| Cow position: | chr13:60424033-60424342 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 106 |
| Conread position: | 25-334 |
| Cow position: | chr13:21603000-21603311 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 25-334 |
| Cow position: | chr13:32735901-32735594 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 100 |
| Conread position: | 33-334 |
| Cow position: | chr13:31729603-31729308 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 130, 44 |
| Conread position: | 37-334 |
| Cow position: | chr13:30654127-30653827 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 88 |
| Conread position: | 44-334 |
| Cow position: | chr13:5624436-5624151 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 92-334 |
| Cow position: | chr13:3760271-3760031 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 182, 31 |
| Conread position: | 107-334 |
| Cow position: | chr13:30239720-30239945 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 168, 16 |
| Conread position: | 122-334 |
| Cow position: | chr13:54240053-54239843 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 151, 56 |
| Conread position: | 123-334 |
| Cow position: | chr13:11388595-11388803 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 150, 37 |
| Conread position: | 158-334 |
| Cow position: | chr13:61952670-61952858 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 205-334 |
| Cow position: | chr13:15922997-15922860 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.