Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-170 |
| Cow position: | chr15:1879107-1878940 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-193 |
| Cow position: | chr15:51675855-51676062 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 1-195 |
| Cow position: | chr15:51716553-51716762 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 1-209 |
| Cow position: | chr15:31360004-31360220 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 159, 122 |
| Conread position: | 1-209 |
| Cow position: | chr15:36624710-36624500 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 89 |
| Conread position: | 1-209 |
| Cow position: | chr15:44301966-44301750 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 164, 119 |
| Conread position: | 1-334 |
| Cow position: | chr15:5981499-5981829 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 162, 60 |
| Conread position: | 1-334 |
| Cow position: | chr15:7235465-7235794 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 127 |
| Conread position: | 1-334 |
| Cow position: | chr15:14581223-14580889 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 122 |
| Conread position: | 1-334 |
| Cow position: | chr15:24794961-24795288 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 54 |
| Conread position: | 1-334 |
| Cow position: | chr15:35646541-35646212 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 159, 15 |
| Conread position: | 2-331 |
| Cow position: | chr15:13390180-13389856 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 35 |
| Conread position: | 2-334 |
| Cow position: | chr15:18577854-18578184 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 121 |
| Conread position: | 2-334 |
| Cow position: | chr15:53410049-53410377 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 22 |
| Conread position: | 3-207 |
| Cow position: | chr15:53299608-53299816 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 131, 122 |
| Conread position: | 3-209 |
| Cow position: | chr15:4672576-4672789 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 157, 100 |
| Conread position: | 3-209 |
| Cow position: | chr15:24296233-24296443 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 160, 93 |
| Conread position: | 3-278 |
| Cow position: | chr15:9912089-9911830 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 3-325 |
| Cow position: | chr15:4766333-4766654 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-331 |
| Cow position: | chr15:4686871-4687198 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 120 |
| Conread position: | 3-332 |
| Cow position: | chr15:19736913-19736586 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 40 |
| Conread position: | 3-333 |
| Cow position: | chr15:5010489-5010162 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:107143-107472 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:368505-368195 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 157, 65 |
| Conread position: | 3-334 |
| Cow position: | chr15:1299405-1299059 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 113, 207 |
| Conread position: | 3-334 |
| Cow position: | chr15:1765460-1765786 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 160, 82 |
| Conread position: | 3-334 |
| Cow position: | chr15:2077795-2078120 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 13 |
| Conread position: | 3-334 |
| Cow position: | chr15:2646507-2646182 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 50 |
| Conread position: | 3-334 |
| Cow position: | chr15:2926449-2926762 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 3-334 |
| Cow position: | chr15:4386899-4387228 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:4726344-4726674 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:6154784-6154457 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:6590974-6590645 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 105 |
| Conread position: | 3-334 |
| Cow position: | chr15:7564139-7564469 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:20411740-20412067 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 48 |
| Conread position: | 3-334 |
| Cow position: | chr15:28489010-28488683 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 160, 32 |
| Conread position: | 3-334 |
| Cow position: | chr15:33122520-33122851 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:35752163-35751834 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:35898634-35898303 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 120 |
| Conread position: | 3-334 |
| Cow position: | chr15:41659310-41659639 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 4-334 |
| Cow position: | chr15:7838412-7838740 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 121 |
| Conread position: | 4-334 |
| Cow position: | chr15:32067465-32067138 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 33 |
| Conread position: | 5-334 |
| Cow position: | chr15:18266631-18266294 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 60 |
| Conread position: | 7-209 |
| Cow position: | chr15:51218870-51219080 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 10-334 |
| Cow position: | chr15:25205857-25205535 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 113 |
| Conread position: | 10-334 |
| Cow position: | chr15:53339372-53339694 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 41 |
| Conread position: | 22-209 |
| Cow position: | chr15:6383001-6382805 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 6, 102 |
| Conread position: | 25-325 |
| Cow position: | chr15:17036493-17036197 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 138, 57 |
| Conread position: | 25-334 |
| Cow position: | chr15:3260156-3259850 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 18 |
| Conread position: | 25-334 |
| Cow position: | chr15:42531080-42531390 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 70 |
| Conread position: | 27-330 |
| Cow position: | chr15:4813750-4814057 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 87 |
| Conread position: | 27-333 |
| Cow position: | chr15:7546038-7546343 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 44-334 |
| Cow position: | chr15:6552598-6552309 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 119, 79 |
| Conread position: | 53-328 |
| Cow position: | chr15:32695357-32695624 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 95, 62 |
| Conread position: | 56-334 |
| Cow position: | chr15:1783527-1783802 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 58-207 |
| Cow position: | chr15:4962812-4962968 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 67 |
| Conread position: | 60-334 |
| Cow position: | chr15:4081036-4080764 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 214, 63 |
| Conread position: | 69-258 |
| Cow position: | chr15:19395750-19395565 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 102, 129 |
| Conread position: | 107-331 |
| Cow position: | chr15:29342766-29342532 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 205-334 |
| Cow position: | chr15:16190437-16190300 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 205-334 |
| Cow position: | chr15:44072014-44072150 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 206-334 |
| Cow position: | chr15:6486849-6486976 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.