Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-209 |
| Cow position: | chr16:42735781-42735572 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 161, 31 |
| Conread position: | 1-330 |
| Cow position: | chr16:28158366-28158706 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 43 |
| Conread position: | 1-334 |
| Cow position: | chr16:3330730-3331058 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 51 |
| Conread position: | 1-334 |
| Cow position: | chr16:16240491-16240165 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 2-330 |
| Cow position: | chr16:20202771-20203100 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 75 |
| Conread position: | 2-334 |
| Cow position: | chr16:8815306-8814979 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 98 |
| Conread position: | 2-334 |
| Cow position: | chr16:18667181-18667514 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 118 |
| Conread position: | 2-334 |
| Cow position: | chr16:29047821-29048151 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 161, 121 |
| Conread position: | 3-209 |
| Cow position: | chr16:25086412-25086625 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 120 |
| Conread position: | 3-209 |
| Cow position: | chr16:27732582-27732368 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-271 |
| Cow position: | chr16:5485526-5485781 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 160, 55 |
| Conread position: | 3-331 |
| Cow position: | chr16:41753810-41753487 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 272, 120 |
| Conread position: | 3-333 |
| Cow position: | chr16:51084957-51085284 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:33328-33660 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 41 |
| Conread position: | 3-334 |
| Cow position: | chr16:838118-838441 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 3-334 |
| Cow position: | chr16:1566654-1566335 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 271, 94 |
| Conread position: | 3-334 |
| Cow position: | chr16:1861035-1861369 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:3088404-3088075 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:5119219-5118890 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:5662639-5662968 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:7675653-7675329 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 40 |
| Conread position: | 3-334 |
| Cow position: | chr16:10439058-10439385 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 3-334 |
| Cow position: | chr16:19778849-19778523 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 19 |
| Conread position: | 3-334 |
| Cow position: | chr16:23535101-23534770 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:23984100-23984431 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:25342771-25343099 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:25442429-25442758 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:25456681-25456352 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:27594307-27594636 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:28169522-28169193 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr16:28470270-28469933 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 164 |
| Conread position: | 3-334 |
| Cow position: | chr16:37480055-37479727 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 160, 26 |
| Conread position: | 3-334 |
| Cow position: | chr16:40295361-40295038 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 40 |
| Conread position: | 3-334 |
| Cow position: | chr16:43896462-43896135 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 125 |
| Conread position: | 5-334 |
| Cow position: | chr16:5890802-5891125 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 118 |
| Conread position: | 7-334 |
| Cow position: | chr16:2410125-2409805 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 156, 52 |
| Conread position: | 7-334 |
| Cow position: | chr16:2726409-2726086 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 44 |
| Conread position: | 7-334 |
| Cow position: | chr16:12537144-12536823 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 137, 121 |
| Conread position: | 13-334 |
| Cow position: | chr16:25258613-25258931 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 24 |
| Conread position: | 19-334 |
| Cow position: | chr16:34531105-34531416 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 25-279 |
| Cow position: | chr16:40557123-40556869 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 138, 103 |
| Conread position: | 25-333 |
| Cow position: | chr16:54324513-54324201 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 100 |
| Conread position: | 25-334 |
| Cow position: | chr16:1433009-1433313 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 25-334 |
| Cow position: | chr16:14664992-14664687 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 25-334 |
| Cow position: | chr16:15185901-15186202 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 25-334 |
| Cow position: | chr16:27712360-27712060 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 249, 23 |
| Conread position: | 37-334 |
| Cow position: | chr16:20193338-20193043 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 86 |
| Conread position: | 46-194 |
| Cow position: | chr16:23251127-23250971 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 115, 77 |
| Conread position: | 59-333 |
| Cow position: | chr16:4474751-4474474 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 65 |
| Conread position: | 98-334 |
| Cow position: | chr16:26664620-26664855 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 125, 25 |
| Conread position: | 206-332 |
| Cow position: | chr16:22800680-22800546 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.