Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-200 |
| Cow position: | chr17:15372584-15372791 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 160, 122 |
| Conread position: | 1-334 |
| Cow position: | chr17:20086401-20086073 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 2-201 |
| Cow position: | chr17:22133638-22133846 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 2-209 |
| Cow position: | chr17:3654916-3654701 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 121 |
| Conread position: | 2-334 |
| Cow position: | chr17:20080508-20080193 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 109 |
| Conread position: | 3-200 |
| Cow position: | chr17:20099102-20098898 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 160, 45 |
| Conread position: | 3-209 |
| Cow position: | chr17:2246712-2246498 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-333 |
| Cow position: | chr17:11784232-11784569 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 79, 129 |
| Conread position: | 3-334 |
| Cow position: | chr17:182947-183274 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 123 |
| Conread position: | 3-334 |
| Cow position: | chr17:6069917-6070232 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 3-334 |
| Cow position: | chr17:11086353-11086024 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr17:13967301-13967629 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 109 |
| Conread position: | 3-334 |
| Cow position: | chr17:15141981-15141654 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr17:15437158-15437487 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr17:23323074-23322745 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr17:24028630-24028302 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 121 |
| Conread position: | 3-334 |
| Cow position: | chr17:24783536-24783865 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr17:27793407-27793080 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 21 |
| Conread position: | 3-334 |
| Cow position: | chr17:28027130-28026804 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 120 |
| Conread position: | 3-334 |
| Cow position: | chr17:29302130-29302460 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 128 |
| Conread position: | 3-334 |
| Cow position: | chr17:39049589-39049920 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr17:40806181-40806510 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr17:43989876-43990205 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 4-333 |
| Cow position: | chr17:19267459-19267143 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 270, 54 |
| Conread position: | 4-334 |
| Cow position: | chr17:3640530-3640202 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 119 |
| Conread position: | 5-331 |
| Cow position: | chr17:2169796-2170121 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 8-334 |
| Cow position: | chr17:39819-40143 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 115 |
| Conread position: | 16-334 |
| Cow position: | chr17:6121172-6121489 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 107 |
| Conread position: | 17-334 |
| Cow position: | chr17:17257302-17256987 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 106 |
| Conread position: | 25-334 |
| Cow position: | chr17:6261255-6261562 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 98 |
| Conread position: | 25-334 |
| Cow position: | chr17:15852089-15852396 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 39-334 |
| Cow position: | chr17:2554865-2554572 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 84 |
| Conread position: | 48-334 |
| Cow position: | chr17:20415041-20414757 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 53-334 |
| Cow position: | chr17:19980712-19980436 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 70 |
| Conread position: | 85-334 |
| Cow position: | chr17:22561353-22561591 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 188, 43 |
| Conread position: | 85-334 |
| Cow position: | chr17:34159183-34159429 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 92-271 |
| Cow position: | chr17:20231281-20231450 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 92-332 |
| Cow position: | chr17:16121144-16120905 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 92, 31 |
| Conread position: | 95-334 |
| Cow position: | chr17:33284222-33283989 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 98-334 |
| Cow position: | chr17:45271650-45271416 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 176, 25 |
| Conread position: | 121-334 |
| Cow position: | chr17:2175411-2175623 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 205-334 |
| Cow position: | chr17:34574309-34574446 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.