Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 2-334 |
| Cow position: | chr2:54693972-54694297 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 47 |
| Conread position: | 3-101 |
| Cow position: | chr2:49628807-49628905 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-209 |
| Cow position: | chr2:12362955-12362738 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 3-209 |
| Cow position: | chr2:18242874-18242661 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 151, 125 |
| Conread position: | 3-209 |
| Cow position: | chr2:19225895-19226100 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 102, 129 |
| Conread position: | 3-209 |
| Cow position: | chr2:34563633-34563430 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 3-209 |
| Cow position: | chr2:47602235-47602020 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 85, 126 |
| Conread position: | 3-325 |
| Cow position: | chr2:10610615-10610295 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-330 |
| Cow position: | chr2:574620-574940 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 120 |
| Conread position: | 3-332 |
| Cow position: | chr2:6005815-6005492 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 155, 40 |
| Conread position: | 3-332 |
| Cow position: | chr2:32065009-32064689 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 120 |
| Conread position: | 3-333 |
| Cow position: | chr2:14209793-14209465 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-333 |
| Cow position: | chr2:16074510-16074182 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-333 |
| Cow position: | chr2:45938671-45938346 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-333 |
| Cow position: | chr2:50078598-50078916 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 271, 40 |
| Conread position: | 3-333 |
| Cow position: | chr2:56888767-56889095 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:246853-246531 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 61 |
| Conread position: | 3-334 |
| Cow position: | chr2:281654-281327 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 36 |
| Conread position: | 3-334 |
| Cow position: | chr2:364037-363709 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 37 |
| Conread position: | 3-334 |
| Cow position: | chr2:9908944-9909282 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:9958043-9957714 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:10185198-10184867 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:10731832-10731502 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 123 |
| Conread position: | 3-334 |
| Cow position: | chr2:11558879-11559208 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:12223248-12222919 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 125 |
| Conread position: | 3-334 |
| Cow position: | chr2:12479236-12478902 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 161 |
| Conread position: | 3-334 |
| Cow position: | chr2:12696437-12696110 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 22 |
| Conread position: | 3-334 |
| Cow position: | chr2:13044678-13044349 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:16901285-16901611 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:19012394-19012715 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 271, 79 |
| Conread position: | 3-334 |
| Cow position: | chr2:24926447-24926773 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 40 |
| Conread position: | 3-334 |
| Cow position: | chr2:25887519-25887191 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:28648580-28648250 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 122 |
| Conread position: | 3-334 |
| Cow position: | chr2:32458036-32457701 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 89 |
| Conread position: | 3-334 |
| Cow position: | chr2:34052188-34052521 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 63, 159 |
| Conread position: | 3-334 |
| Cow position: | chr2:36981419-36981745 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:41687798-41688126 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:42669679-42669343 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 85, 128 |
| Conread position: | 3-334 |
| Cow position: | chr2:47037403-47037073 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:52063790-52064118 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 77 |
| Conread position: | 3-334 |
| Cow position: | chr2:54738518-54738845 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:57336575-57336906 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 121 |
| Conread position: | 3-334 |
| Cow position: | chr2:62729541-62729869 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 53 |
| Conread position: | 3-334 |
| Cow position: | chr2:65937196-65936869 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 40 |
| Conread position: | 3-334 |
| Cow position: | chr2:72688637-72688966 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:80291733-80291404 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr2:81258207-81258535 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 4-161 |
| Cow position: | chr2:16291718-16291873 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 134 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-278 |
| Cow position: | chr2:15575820-15575551 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 153, 119 |
| Conread position: | 4-334 |
| Cow position: | chr2:174536-174208 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 119 |
| Conread position: | 4-334 |
| Cow position: | chr2:32656672-32656993 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 35 |
| Conread position: | 5-208 |
| Cow position: | chr2:42361236-42361026 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 158, 38 |
| Conread position: | 5-209 |
| Cow position: | chr2:43445999-43446204 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 158, 38 |
| Conread position: | 5-334 |
| Cow position: | chr2:2087137-2086810 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 118 |
| Conread position: | 5-334 |
| Cow position: | chr2:4402118-4401792 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 134, 227 |
| Conread position: | 5-334 |
| Cow position: | chr2:28639817-28639484 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 7-334 |
| Cow position: | chr2:8119578-8119901 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 36 |
| Conread position: | 7-334 |
| Cow position: | chr2:24925602-24925924 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 36 |
| Conread position: | 8-334 |
| Cow position: | chr2:26922462-26922786 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 115 |
| Conread position: | 12-334 |
| Cow position: | chr2:6880408-6880717 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 19-334 |
| Cow position: | chr2:13553613-13553926 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 104 |
| Conread position: | 23-331 |
| Cow position: | chr2:45966984-45966662 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 25-334 |
| Cow position: | chr2:6962563-6962870 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 7 |
| Conread position: | 25-334 |
| Cow position: | chr2:10264358-10264057 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 92 |
| Conread position: | 25-334 |
| Cow position: | chr2:11158069-11157762 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 25-334 |
| Cow position: | chr2:28794290-28794604 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 80, 105 |
| Conread position: | 25-334 |
| Cow position: | chr2:47811903-47812208 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 33 |
| Conread position: | 25-334 |
| Cow position: | chr2:50982096-50981789 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 25-334 |
| Cow position: | chr2:53330846-53331158 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 98 |
| Conread position: | 30-334 |
| Cow position: | chr2:33082909-33082610 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 93 |
| Conread position: | 34-334 |
| Cow position: | chr2:11682208-11682504 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 86, 145 |
| Conread position: | 40-334 |
| Cow position: | chr2:5869066-5868775 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 120, 75 |
| Conread position: | 45-334 |
| Cow position: | chr2:210970-210698 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 78 |
| Conread position: | 46-209 |
| Cow position: | chr2:53005175-53005003 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 78 |
| Conread position: | 59-334 |
| Cow position: | chr2:975600-975322 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 104, 64 |
| Conread position: | 76-334 |
| Cow position: | chr2:49303192-49302937 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 198, 47 |
| Conread position: | 93-334 |
| Cow position: | chr2:67188728-67188965 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 181, 30 |
| Conread position: | 106-334 |
| Cow position: | chr2:46049104-46048878 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 168, 17 |
| Conread position: | 136-334 |
| Cow position: | chr2:10466749-10466943 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 139, 39 |
| Conread position: | 205-334 |
| Cow position: | chr2:8085216-8085353 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 207-334 |
| Cow position: | chr2:4932963-4932830 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 213-334 |
| Cow position: | chr2:9188816-9188687 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.