Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-209 |
| Cow position: | chr21:2712569-2712770 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-209 |
| Cow position: | chr21:4588347-4588141 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 159, 40 |
| Conread position: | 1-334 |
| Cow position: | chr21:2417867-2418193 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 68 |
| Conread position: | 1-334 |
| Cow position: | chr21:26849367-26849045 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 210, 42 |
| Conread position: | 1-334 |
| Cow position: | chr21:34655487-34655819 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 18 |
| Conread position: | 1-334 |
| Cow position: | chr21:44764294-44763965 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 57 |
| Conread position: | 2-334 |
| Cow position: | chr21:40270013-40269682 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 161, 121 |
| Conread position: | 3-209 |
| Cow position: | chr21:2880165-2879952 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-209 |
| Cow position: | chr21:33710809-33711023 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 120 |
| Conread position: | 3-271 |
| Cow position: | chr21:10851737-10851995 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-327 |
| Cow position: | chr21:28257086-28257403 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 13 |
| Conread position: | 3-329 |
| Cow position: | chr21:7591318-7591640 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 3-333 |
| Cow position: | chr21:47942609-47942935 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 108 |
| Conread position: | 3-334 |
| Cow position: | chr21:2512510-2512838 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 41 |
| Conread position: | 3-334 |
| Cow position: | chr21:5018800-5019131 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr21:6414364-6414035 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr21:26635497-26635168 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr21:27285120-27285436 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 3-334 |
| Cow position: | chr21:47646991-47647321 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 4-334 |
| Cow position: | chr21:13298254-13298576 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 119 |
| Conread position: | 5-334 |
| Cow position: | chr21:147584-147909 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 37 |
| Conread position: | 5-334 |
| Cow position: | chr21:4565123-4565449 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 270, 103 |
| Conread position: | 7-334 |
| Cow position: | chr21:31514652-31514328 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 116 |
| Conread position: | 10-334 |
| Cow position: | chr21:30563337-30563653 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 139, 113 |
| Conread position: | 17-271 |
| Cow position: | chr21:27150154-27150402 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 143, 106 |
| Conread position: | 20-329 |
| Cow position: | chr21:31639590-31639897 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 252, 108 |
| Conread position: | 25-333 |
| Cow position: | chr21:27567428-27567763 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 70 |
| Conread position: | 25-333 |
| Cow position: | chr21:30597788-30597482 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 103 |
| Conread position: | 25-334 |
| Cow position: | chr21:27069282-27068975 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 98 |
| Conread position: | 27-331 |
| Cow position: | chr21:29003849-29003534 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 103 |
| Conread position: | 58-334 |
| Cow position: | chr21:23804135-23803864 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 220, 65 |
| Conread position: | 60-334 |
| Cow position: | chr21:31250710-31250982 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 169, 63 |
| Conread position: | 63-334 |
| Cow position: | chr21:1194167-1194425 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 211, 39 |
| Conread position: | 66-334 |
| Cow position: | chr21:35143968-35143705 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 208, 57 |
| Conread position: | 88-334 |
| Cow position: | chr21:26402012-26401764 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 183, 35 |
| Conread position: | 226-329 |
| Cow position: | chr21:4185614-4185721 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.