Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-209 |
| Cow position: | chr22:8736861-8736647 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 122 |
| Conread position: | 1-209 |
| Cow position: | chr22:46585082-46584866 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 162, 122 |
| Conread position: | 1-332 |
| Cow position: | chr22:2563268-2562943 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 122 |
| Conread position: | 1-334 |
| Cow position: | chr22:29011789-29011460 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 122 |
| Conread position: | 1-334 |
| Cow position: | chr22:44397916-44398247 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 122 |
| Conread position: | 2-334 |
| Cow position: | chr22:1323641-1323965 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 38 |
| Conread position: | 3-210 |
| Cow position: | chr22:23752218-23752005 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 77, 90 |
| Conread position: | 3-260 |
| Cow position: | chr22:6333198-6333446 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 158, 85 |
| Conread position: | 3-331 |
| Cow position: | chr22:34601082-34601396 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 41 |
| Conread position: | 3-332 |
| Cow position: | chr22:296935-297263 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 159 |
| Conread position: | 3-332 |
| Cow position: | chr22:19142197-19141874 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 40 |
| Conread position: | 3-334 |
| Cow position: | chr22:290210-289880 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 16 |
| Conread position: | 3-334 |
| Cow position: | chr22:1519541-1519215 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 97 |
| Conread position: | 3-334 |
| Cow position: | chr22:1880293-1880622 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:3803669-3803998 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:5313773-5314106 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 124 |
| Conread position: | 3-334 |
| Cow position: | chr22:11803563-11803237 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 77 |
| Conread position: | 3-334 |
| Cow position: | chr22:11807252-11806932 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:15852911-15853237 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:20239348-20239021 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 21 |
| Conread position: | 3-334 |
| Cow position: | chr22:21590911-21591240 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 158, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:30677225-30676896 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 127 |
| Conread position: | 3-334 |
| Cow position: | chr22:31333560-31333233 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:32283193-32282864 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:34169824-34170152 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:35670177-35669853 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 108 |
| Conread position: | 3-334 |
| Cow position: | chr22:36860059-36859731 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:37292189-37291859 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:39468029-39467698 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:44367993-44367664 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 127 |
| Conread position: | 3-334 |
| Cow position: | chr22:44935451-44935779 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr22:46580229-46579898 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 127 |
| Conread position: | 5-333 |
| Cow position: | chr22:46614794-46615119 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 110 |
| Conread position: | 5-334 |
| Cow position: | chr22:13766852-13767181 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 7-334 |
| Cow position: | chr22:559216-558893 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 156, 116 |
| Conread position: | 7-334 |
| Cow position: | chr22:42992668-42992988 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 116 |
| Conread position: | 8-334 |
| Cow position: | chr22:29499034-29499358 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 115 |
| Conread position: | 10-209 |
| Cow position: | chr22:17326962-17326755 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 153, 115 |
| Conread position: | 25-334 |
| Cow position: | chr22:45014856-45015163 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 26-329 |
| Cow position: | chr22:3272578-3272258 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 29-212 |
| Cow position: | chr22:3305087-3304898 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 31-205 |
| Cow position: | chr22:8880615-8880796 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 16 |
| Conread position: | 34-209 |
| Cow position: | chr22:28783634-28783816 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 129, 89 |
| Conread position: | 36-333 |
| Cow position: | chr22:15955506-15955216 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 238, 87 |
| Conread position: | 52-209 |
| Cow position: | chr22:29352911-29353076 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 71 |
| Conread position: | 53-334 |
| Cow position: | chr22:18605262-18604983 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 70 |
| Conread position: | 59-334 |
| Cow position: | chr22:48274794-48274527 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 215, 54 |
| Conread position: | 60-334 |
| Cow position: | chr22:6501368-6501098 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 63-334 |
| Cow position: | chr22:21336503-21336771 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 97, 60 |
| Conread position: | 92-334 |
| Cow position: | chr22:18028848-18029087 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 182, 30 |
| Conread position: | 205-334 |
| Cow position: | chr22:29853534-29853671 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 208-330 |
| Cow position: | chr22:5013751-5013881 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.