Cow genome map

Conread name: rsag05_b2.y1

Conread position: 1-209
Cow position: chr28:25761001-25761212 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 119, 147

Conread position: 1-333
Cow position: chr28:10471190-10471514 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 185, 42

Conread position: 1-334
Cow position: chr28:1166362-1166031 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 123

Conread position: 1-334
Cow position: chr28:7059136-7058805 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 122

Conread position: 1-334
Cow position: chr28:21361025-21361355 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 122

Conread position: 1-334
Cow position: chr28:22231756-22231429 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 76

Conread position: 1-334
Cow position: chr28:26424730-26424398 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 123

Conread position: 3-208
Cow position: chr28:15685003-15685213 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 127, 37

Conread position: 3-209
Cow position: chr28:5766266-5766479 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 157, 83

Conread position: 3-209
Cow position: chr28:10580340-10580124 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 112, 122

Conread position: 3-209
Cow position: chr28:13461505-13461716 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 163, 120

Conread position: 3-275
Cow position: chr28:23023763-23024016 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 270, 17

Conread position: 3-311
Cow position: chr28:29821525-29821828 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 160, 40

Conread position: 3-330
Cow position: chr28:24669132-24669456 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 84

Conread position: 3-332
Cow position: chr28:32790858-32790538 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 157, 13

Conread position: 3-334
Cow position: chr28:484060-483731 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 153, 120

Conread position: 3-334
Cow position: chr28:784191-784520 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 160, 120

Conread position: 3-334
Cow position: chr28:1216301-1215976 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 143, 120

Conread position: 3-334
Cow position: chr28:1459629-1459958 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 120

Conread position: 3-334
Cow position: chr28:1506400-1506729 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:1813399-1813077 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 114

Conread position: 3-334
Cow position: chr28:1954889-1955218 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:3190718-3190389 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:5939022-5939350 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 160, 120

Conread position: 3-334
Cow position: chr28:6537276-6536940 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:6778407-6778078 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:7827519-7827841 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 21

Conread position: 3-334
Cow position: chr28:8380571-8380899 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:9288484-9288810 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 19

Conread position: 3-334
Cow position: chr28:15034577-15034248 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 120

Conread position: 3-334
Cow position: chr28:17389935-17390266 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:18518913-18518584 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:22259620-22259294 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:24590391-24590719 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:33638078-33638401 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr28:34595766-34596094 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 161, 120

Conread position: 4-334
Cow position: chr28:11504706-11504378 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 168

Conread position: 4-334
Cow position: chr28:14703848-14703521 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 159, 119

Conread position: 7-209
Cow position: chr28:7741970-7742181 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 66, 117

Conread position: 7-334
Cow position: chr28:7003534-7003863 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 116

Conread position: 12-333
Cow position: chr28:10495956-10495639 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 14

Conread position: 17-334
Cow position: chr28:31591107-31591422 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 106

Conread position: 23-282
Cow position: chr28:13721568-13721824 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 19, 0

Conread position: 26-334
Cow position: chr28:2086022-2086328 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 94

Conread position: 27-334
Cow position: chr28:1772947-1773247 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 33

Conread position: 42-334
Cow position: chr28:10067489-10067198 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 136

Conread position: 57-334
Cow position: chr28:24884442-24884708 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 135, 73

Conread position: 62-206
Cow position: chr28:2117587-2117739 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 98, 61

Conread position: 80-210
Cow position: chr28:7828204-7828333 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 94-334
Cow position: chr28:15998728-15998966 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 180, 29

Conread position: 134-333
Cow position: chr28:5567815-5568013 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 140, 26

Conread position: 149-334
Cow position: chr28:3019040-3018844 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 61

Conread position: 170-334
Cow position: chr28:33253987-33254166 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 205-334
Cow position: chr28:9180602-9180738 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 205-334
Cow position: chr28:17630825-17630962 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 207-334
Cow position: chr28:17665599-17665464 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 67, 0

Show alignments to all cow chromosomes.