Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-209 |
| Cow position: | chr3:18462427-18462218 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 122 |
| Conread position: | 1-334 |
| Cow position: | chr3:38494651-38494982 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 2-209 |
| Cow position: | chr3:58948942-58949156 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 161, 121 |
| Conread position: | 2-334 |
| Cow position: | chr3:3840104-3839775 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 121 |
| Conread position: | 2-334 |
| Cow position: | chr3:57483313-57482983 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 121 |
| Conread position: | 3-158 |
| Cow position: | chr3:51938690-51938536 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 3-209 |
| Cow position: | chr3:1742745-1742959 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-209 |
| Cow position: | chr3:5993667-5993460 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 160, 55 |
| Conread position: | 3-209 |
| Cow position: | chr3:31416430-31416644 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 132, 40 |
| Conread position: | 3-209 |
| Cow position: | chr3:34029507-34029292 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-209 |
| Cow position: | chr3:48229100-48228888 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 157, 7 |
| Conread position: | 3-209 |
| Cow position: | chr3:51364375-51364161 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 152, 120 |
| Conread position: | 3-209 |
| Cow position: | chr3:72631476-72631684 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 160, 96 |
| Conread position: | 3-325 |
| Cow position: | chr3:5952773-5952453 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 120 |
| Conread position: | 3-331 |
| Cow position: | chr3:30315962-30316288 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 21 |
| Conread position: | 3-331 |
| Cow position: | chr3:56295599-56295925 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-332 |
| Cow position: | chr3:44925476-44925804 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 120 |
| Conread position: | 3-333 |
| Cow position: | chr3:41209188-41208871 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:595549-595869 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 49 |
| Conread position: | 3-334 |
| Cow position: | chr3:2709454-2709127 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 160, 48 |
| Conread position: | 3-334 |
| Cow position: | chr3:2870202-2870531 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:2918883-2919207 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 153, 74 |
| Conread position: | 3-334 |
| Cow position: | chr3:3524425-3524754 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:4287503-4287829 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 49 |
| Conread position: | 3-334 |
| Cow position: | chr3:6687204-6687536 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 50 |
| Conread position: | 3-334 |
| Cow position: | chr3:6783782-6784108 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:7157306-7156976 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:7478501-7478184 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 3-334 |
| Cow position: | chr3:16224298-16224628 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 121 |
| Conread position: | 3-334 |
| Cow position: | chr3:18812912-18813242 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:19755548-19755221 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 95 |
| Conread position: | 3-334 |
| Cow position: | chr3:19880059-19880387 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 5 |
| Conread position: | 3-334 |
| Cow position: | chr3:19945659-19945990 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:23206460-23206133 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:29575710-29575381 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:32621628-32621299 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 3-334 |
| Cow position: | chr3:34505939-34505610 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:36863044-36862715 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:40338734-40338405 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 162, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:43191878-43191549 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:46503963-46504292 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 3-334 |
| Cow position: | chr3:46859877-46859551 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 34 |
| Conread position: | 3-334 |
| Cow position: | chr3:49136152-49135822 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:49543797-49543469 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 59 |
| Conread position: | 3-334 |
| Cow position: | chr3:51857277-51856948 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:53517023-53517352 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:56146717-56147044 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 121 |
| Conread position: | 3-334 |
| Cow position: | chr3:63240831-63240501 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 121 |
| Conread position: | 3-334 |
| Cow position: | chr3:64026721-64026395 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 94 |
| Conread position: | 3-334 |
| Cow position: | chr3:66621610-66621938 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:66889556-66889225 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:68698559-68698232 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:69932420-69932091 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr3:74058940-74059268 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 4-209 |
| Cow position: | chr3:32200432-32200644 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 159, 22 |
| Conread position: | 5-210 |
| Cow position: | chr3:2854030-2853823 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 157, 101 |
| Conread position: | 5-334 |
| Cow position: | chr3:37970462-37970788 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 118 |
| Conread position: | 12-334 |
| Cow position: | chr3:15054297-15053968 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 196 |
| Conread position: | 25-334 |
| Cow position: | chr3:21181262-21180955 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 103 |
| Conread position: | 25-334 |
| Cow position: | chr3:48057925-48057620 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 27-334 |
| Cow position: | chr3:45975939-45976240 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 118, 25 |
| Conread position: | 27-334 |
| Cow position: | chr3:78025983-78025680 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 96 |
| Conread position: | 30-334 |
| Cow position: | chr3:19940371-19940667 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 93 |
| Conread position: | 31-334 |
| Cow position: | chr3:4029174-4029474 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 92 |
| Conread position: | 33-334 |
| Cow position: | chr3:15188253-15188552 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 90 |
| Conread position: | 37-331 |
| Cow position: | chr3:74851701-74851409 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 172, 86 |
| Conread position: | 48-334 |
| Cow position: | chr3:59863021-59863305 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 80 |
| Conread position: | 52-334 |
| Cow position: | chr3:58784693-58784413 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 108, 71 |
| Conread position: | 59-330 |
| Cow position: | chr3:29580079-29580359 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 64 |
| Conread position: | 60-334 |
| Cow position: | chr3:10242124-10242396 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 214, 63 |
| Conread position: | 63-334 |
| Cow position: | chr3:38868061-38868334 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 60 |
| Conread position: | 115-333 |
| Cow position: | chr3:72388942-72388711 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 205-334 |
| Cow position: | chr3:28669693-28669824 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 205-334 |
| Cow position: | chr3:30330537-30330400 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 206-334 |
| Cow position: | chr3:39024479-39024615 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.