Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-192 |
| Cow position: | chr4:34178031-34177835 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 161 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 131, 6 |
| Conread position: | 1-209 |
| Cow position: | chr4:14139590-14139802 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 145, 122 |
| Conread position: | 1-333 |
| Cow position: | chr4:14755459-14755130 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 125 |
| Conread position: | 1-334 |
| Cow position: | chr4:28832932-28833260 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 28 |
| Conread position: | 1-334 |
| Cow position: | chr4:44780004-44779680 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 114 |
| Conread position: | 1-334 |
| Cow position: | chr4:49716986-49717323 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 21 |
| Conread position: | 2-334 |
| Cow position: | chr4:6567595-6567925 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 121 |
| Conread position: | 2-334 |
| Cow position: | chr4:57985208-57985537 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 121 |
| Conread position: | 3-200 |
| Cow position: | chr4:12240007-12239802 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-209 |
| Cow position: | chr4:6489149-6488935 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-209 |
| Cow position: | chr4:12588545-12588758 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-209 |
| Cow position: | chr4:17244323-17244537 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-216 |
| Cow position: | chr4:20067510-20067295 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 181, 120 |
| Conread position: | 3-329 |
| Cow position: | chr4:14387038-14387363 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 120 |
| Conread position: | 3-332 |
| Cow position: | chr4:44726795-44727122 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:99000-98667 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:357122-357451 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:604847-605172 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:827425-827754 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:3356716-3356388 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 117 |
| Conread position: | 3-334 |
| Cow position: | chr4:5443608-5443279 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:6865290-6864962 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 59 |
| Conread position: | 3-334 |
| Cow position: | chr4:10882765-10883083 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:11109854-11109528 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 32 |
| Conread position: | 3-334 |
| Cow position: | chr4:13494543-13494878 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 41, 126 |
| Conread position: | 3-334 |
| Cow position: | chr4:16060496-16060825 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 44 |
| Conread position: | 3-334 |
| Cow position: | chr4:16639827-16640154 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:17502114-17501785 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:17924744-17924415 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:25598268-25597940 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:26876566-26876242 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 38 |
| Conread position: | 3-334 |
| Cow position: | chr4:30472430-30472759 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:33494772-33495102 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:36897593-36897919 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 115 |
| Conread position: | 3-334 |
| Cow position: | chr4:41955980-41956309 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:41960117-41960445 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 119 |
| Conread position: | 3-334 |
| Cow position: | chr4:43318419-43318090 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr4:43882322-43882646 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 4-209 |
| Cow position: | chr4:16361139-16361352 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 159, 119 |
| Conread position: | 4-334 |
| Cow position: | chr4:3127029-3127356 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 119 |
| Conread position: | 4-334 |
| Cow position: | chr4:14819681-14819358 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 62 |
| Conread position: | 5-200 |
| Cow position: | chr4:9846988-9846785 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 155, 118 |
| Conread position: | 5-334 |
| Cow position: | chr4:19005114-19004785 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 124 |
| Conread position: | 5-334 |
| Cow position: | chr4:32213391-32213718 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 118 |
| Conread position: | 7-334 |
| Cow position: | chr4:1049042-1048718 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 116 |
| Conread position: | 7-334 |
| Cow position: | chr4:33071613-33071293 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 75 |
| Conread position: | 8-208 |
| Cow position: | chr4:41191409-41191202 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 155, 8 |
| Conread position: | 9-334 |
| Cow position: | chr4:9355602-9355925 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 114 |
| Conread position: | 9-334 |
| Cow position: | chr4:46200508-46200194 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 17-334 |
| Cow position: | chr4:1929411-1929093 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 106 |
| Conread position: | 25-334 |
| Cow position: | chr4:27335177-27335485 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 25-334 |
| Cow position: | chr4:67682436-67682744 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 26-334 |
| Cow position: | chr4:530658-530964 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 97 |
| Conread position: | 26-334 |
| Cow position: | chr4:20241759-20242071 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 246, 97 |
| Conread position: | 34-209 |
| Cow position: | chr4:46666170-46666351 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 129, 7 |
| Conread position: | 41-334 |
| Cow position: | chr4:42405871-42406156 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 7 |
| Conread position: | 53-334 |
| Cow position: | chr4:60649709-60649994 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 57-334 |
| Cow position: | chr4:43867465-43867740 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 71 |
| Conread position: | 60-331 |
| Cow position: | chr4:44899551-44899816 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 188, 65 |
| Conread position: | 64-334 |
| Cow position: | chr4:34183394-34183132 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 90-334 |
| Cow position: | chr4:43898238-43897991 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 184, 33 |
| Conread position: | 123-334 |
| Cow position: | chr4:65222424-65222214 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 187-334 |
| Cow position: | chr4:9846553-9846398 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 206-334 |
| Cow position: | chr4:28175942-28175807 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 109 |
Show alignments to all cow chromosomes.