Cow genome map

Conread name: rsag05_b2.y1

Conread position: 1-208
Cow position: chr6:44262024-44261809 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 159, 122

Conread position: 1-331
Cow position: chr6:18973005-18972683 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 42

Conread position: 1-334
Cow position: chr6:3888060-3887730 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 101

Conread position: 1-334
Cow position: chr6:24240860-24241191 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 122

Conread position: 1-334
Cow position: chr6:31199299-31199631 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 104, 42

Conread position: 1-334
Cow position: chr6:59617548-59617867 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 122

Conread position: 1-334
Cow position: chr6:66233258-66233586 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 23

Conread position: 2-334
Cow position: chr6:8759841-8759506 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 126

Conread position: 3-204
Cow position: chr6:25215675-25215884 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 160, 120

Conread position: 3-209
Cow position: chr6:2376137-2376346 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 155, 66

Conread position: 3-209
Cow position: chr6:58460860-58460650 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 157, 13

Conread position: 3-210
Cow position: chr6:57471125-57471340 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 157, 120

Conread position: 3-270
Cow position: chr6:12627160-12627413 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 107, 0

Conread position: 3-329
Cow position: chr6:10250150-10249825 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-331
Cow position: chr6:69144025-69144349 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 62, 37

Conread position: 3-332
Cow position: chr6:28703252-28702925 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 120

Conread position: 3-332
Cow position: chr6:40276540-40276867 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 120

Conread position: 3-332
Cow position: chr6:40865863-40865542 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 253
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 153, 97

Conread position: 3-332
Cow position: chr6:58028184-58028504 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 271, 79

Conread position: 3-333
Cow position: chr6:38273026-38273353 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 120

Conread position: 3-333
Cow position: chr6:65843073-65843401 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr6:184085-183757 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 120

Conread position: 3-334
Cow position: chr6:330006-329679 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 116

Conread position: 3-334
Cow position: chr6:703669-703998 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr6:1535121-1534795 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 122

Conread position: 3-334
Cow position: chr6:1821169-1820842 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 114

Conread position: 3-334
Cow position: chr6:3150692-3151022 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 118

Conread position: 3-334
Cow position: chr6:7139883-7139554 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 120

Conread position: 3-334
Cow position: chr6:8203647-8203981 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 120

Conread position: 3-334
Cow position: chr6:10645173-10645507 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 243
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 61, 43

Conread position: 3-334
Cow position: chr6:13309921-13309601 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 120

Conread position: 3-334
Cow position: chr6:15139716-15139387 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr6:16591419-16591743 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 79

Conread position: 3-334
Cow position: chr6:17596838-17596509 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr6:21974128-21974454 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 103

Conread position: 3-334
Cow position: chr6:26669404-26669076 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 77

Conread position: 3-334
Cow position: chr6:27375464-27375137 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 32

Conread position: 3-334
Cow position: chr6:28170367-28170694 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 21

Conread position: 3-334
Cow position: chr6:30273436-30273107 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr6:34890665-34890344 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 19

Conread position: 3-334
Cow position: chr6:35875253-35874927 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr6:39910791-39911115 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 157, 77

Conread position: 3-334
Cow position: chr6:40553123-40552796 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 161, 120

Conread position: 3-334
Cow position: chr6:43619181-43619510 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr6:51731538-51731864 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 120

Conread position: 3-334
Cow position: chr6:52694484-52694812 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 127

Conread position: 5-334
Cow position: chr6:3572054-3572381 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 123

Conread position: 5-334
Cow position: chr6:27528558-27528233 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 158, 72

Conread position: 7-334
Cow position: chr6:51715994-51716319 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 116

Conread position: 8-334
Cow position: chr6:28187357-28187052 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 240
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 266, 54

Conread position: 10-334
Cow position: chr6:5948317-5947991 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 115

Conread position: 10-334
Cow position: chr6:7177832-7177507 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 163, 27

Conread position: 11-334
Cow position: chr6:43573794-43574109 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 72, 26

Conread position: 13-161
Cow position: chr6:47625529-47625676 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 125
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 110, 0

Conread position: 25-329
Cow position: chr6:39333393-39333088 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 98

Conread position: 25-331
Cow position: chr6:18985570-18985862 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 239
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 248, 90

Conread position: 25-334
Cow position: chr6:50124-49819 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 22

Conread position: 25-334
Cow position: chr6:3486944-3486638 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 80

Conread position: 25-334
Cow position: chr6:14390408-14390715 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 98

Conread position: 25-334
Cow position: chr6:41228923-41229230 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 242
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 138, 98

Conread position: 26-209
Cow position: chr6:27473910-27474101 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 137, 97

Conread position: 26-334
Cow position: chr6:1381859-1381558 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 222
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 249, 97

Conread position: 27-334
Cow position: chr6:26777685-26777383 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 226
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 133, 62

Conread position: 30-334
Cow position: chr6:36528682-36528984 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 93

Conread position: 52-305
Cow position: chr6:3275637-3275375 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 111, 71

Conread position: 52-333
Cow position: chr6:17047847-17048126 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 76

Conread position: 106-334
Cow position: chr6:28642978-28642752 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 168, 17

Conread position: 123-333
Cow position: chr6:68028723-68028932 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 151, 37

Conread position: 123-334
Cow position: chr6:53543673-53543883 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 151, 37

Conread position: 134-334
Cow position: chr6:62663304-62663503 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 140, 43

Show alignments to all cow chromosomes.