Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-208 |
| Cow position: | chr6:44262024-44261809 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 159, 122 |
| Conread position: | 1-331 |
| Cow position: | chr6:18973005-18972683 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 42 |
| Conread position: | 1-334 |
| Cow position: | chr6:3888060-3887730 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 101 |
| Conread position: | 1-334 |
| Cow position: | chr6:24240860-24241191 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 122 |
| Conread position: | 1-334 |
| Cow position: | chr6:31199299-31199631 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 1-334 |
| Cow position: | chr6:59617548-59617867 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 122 |
| Conread position: | 1-334 |
| Cow position: | chr6:66233258-66233586 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 23 |
| Conread position: | 2-334 |
| Cow position: | chr6:8759841-8759506 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 126 |
| Conread position: | 3-204 |
| Cow position: | chr6:25215675-25215884 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-209 |
| Cow position: | chr6:2376137-2376346 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 155, 66 |
| Conread position: | 3-209 |
| Cow position: | chr6:58460860-58460650 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 157, 13 |
| Conread position: | 3-210 |
| Cow position: | chr6:57471125-57471340 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-270 |
| Cow position: | chr6:12627160-12627413 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 3-329 |
| Cow position: | chr6:10250150-10249825 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-331 |
| Cow position: | chr6:69144025-69144349 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 62, 37 |
| Conread position: | 3-332 |
| Cow position: | chr6:28703252-28702925 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-332 |
| Cow position: | chr6:40276540-40276867 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 120 |
| Conread position: | 3-332 |
| Cow position: | chr6:40865863-40865542 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 3-332 |
| Cow position: | chr6:58028184-58028504 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 271, 79 |
| Conread position: | 3-333 |
| Cow position: | chr6:38273026-38273353 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 120 |
| Conread position: | 3-333 |
| Cow position: | chr6:65843073-65843401 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:184085-183757 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:330006-329679 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 116 |
| Conread position: | 3-334 |
| Cow position: | chr6:703669-703998 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:1535121-1534795 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 122 |
| Conread position: | 3-334 |
| Cow position: | chr6:1821169-1820842 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 114 |
| Conread position: | 3-334 |
| Cow position: | chr6:3150692-3151022 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 118 |
| Conread position: | 3-334 |
| Cow position: | chr6:7139883-7139554 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:8203647-8203981 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:10645173-10645507 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 3-334 |
| Cow position: | chr6:13309921-13309601 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:15139716-15139387 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:16591419-16591743 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 79 |
| Conread position: | 3-334 |
| Cow position: | chr6:17596838-17596509 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:21974128-21974454 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 103 |
| Conread position: | 3-334 |
| Cow position: | chr6:26669404-26669076 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 77 |
| Conread position: | 3-334 |
| Cow position: | chr6:27375464-27375137 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 32 |
| Conread position: | 3-334 |
| Cow position: | chr6:28170367-28170694 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 21 |
| Conread position: | 3-334 |
| Cow position: | chr6:30273436-30273107 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:34890665-34890344 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 19 |
| Conread position: | 3-334 |
| Cow position: | chr6:35875253-35874927 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:39910791-39911115 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 157, 77 |
| Conread position: | 3-334 |
| Cow position: | chr6:40553123-40552796 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 161, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:43619181-43619510 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:51731538-51731864 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr6:52694484-52694812 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 127 |
| Conread position: | 5-334 |
| Cow position: | chr6:3572054-3572381 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 123 |
| Conread position: | 5-334 |
| Cow position: | chr6:27528558-27528233 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 158, 72 |
| Conread position: | 7-334 |
| Cow position: | chr6:51715994-51716319 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 116 |
| Conread position: | 8-334 |
| Cow position: | chr6:28187357-28187052 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 266, 54 |
| Conread position: | 10-334 |
| Cow position: | chr6:5948317-5947991 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 115 |
| Conread position: | 10-334 |
| Cow position: | chr6:7177832-7177507 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 163, 27 |
| Conread position: | 11-334 |
| Cow position: | chr6:43573794-43574109 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 13-161 |
| Cow position: | chr6:47625529-47625676 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 25-329 |
| Cow position: | chr6:39333393-39333088 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 98 |
| Conread position: | 25-331 |
| Cow position: | chr6:18985570-18985862 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 248, 90 |
| Conread position: | 25-334 |
| Cow position: | chr6:50124-49819 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 22 |
| Conread position: | 25-334 |
| Cow position: | chr6:3486944-3486638 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 80 |
| Conread position: | 25-334 |
| Cow position: | chr6:14390408-14390715 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 98 |
| Conread position: | 25-334 |
| Cow position: | chr6:41228923-41229230 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 138, 98 |
| Conread position: | 26-209 |
| Cow position: | chr6:27473910-27474101 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 137, 97 |
| Conread position: | 26-334 |
| Cow position: | chr6:1381859-1381558 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 249, 97 |
| Conread position: | 27-334 |
| Cow position: | chr6:26777685-26777383 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 133, 62 |
| Conread position: | 30-334 |
| Cow position: | chr6:36528682-36528984 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 93 |
| Conread position: | 52-305 |
| Cow position: | chr6:3275637-3275375 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 111, 71 |
| Conread position: | 52-333 |
| Cow position: | chr6:17047847-17048126 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 76 |
| Conread position: | 106-334 |
| Cow position: | chr6:28642978-28642752 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 168, 17 |
| Conread position: | 123-333 |
| Cow position: | chr6:68028723-68028932 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 123-334 |
| Cow position: | chr6:53543673-53543883 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 134-334 |
| Cow position: | chr6:62663304-62663503 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 140, 43 |
Show alignments to all cow chromosomes.