Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-195 |
| Cow position: | chr7:996286-996486 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-209 |
| Cow position: | chr7:54581403-54581619 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 159, 122 |
| Conread position: | 1-209 |
| Cow position: | chr7:59680393-59680609 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 122 |
| Conread position: | 1-209 |
| Cow position: | chr7:64351037-64351249 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 157, 39 |
| Conread position: | 1-331 |
| Cow position: | chr7:19266370-19266046 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 274, 25 |
| Conread position: | 1-334 |
| Cow position: | chr7:21126133-21125801 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 122 |
| Conread position: | 1-334 |
| Cow position: | chr7:33070867-33070536 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 73, 123 |
| Conread position: | 1-334 |
| Cow position: | chr7:63387274-63387610 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 127 |
| Conread position: | 2-274 |
| Cow position: | chr7:33404849-33404576 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 121 |
| Conread position: | 2-332 |
| Cow position: | chr7:546386-546711 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 50 |
| Conread position: | 2-334 |
| Cow position: | chr7:20061034-20061360 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 93 |
| Conread position: | 2-334 |
| Cow position: | chr7:39097003-39096667 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 2-334 |
| Cow position: | chr7:58337492-58337170 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 74 |
| Conread position: | 3-209 |
| Cow position: | chr7:14213828-14213620 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 156, 30 |
| Conread position: | 3-209 |
| Cow position: | chr7:33785812-33786026 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-210 |
| Cow position: | chr7:59685357-59685576 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 3-214 |
| Cow position: | chr7:3157016-3157240 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 123 |
| Conread position: | 3-222 |
| Cow position: | chr7:29368487-29368265 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 98, 39 |
| Conread position: | 3-330 |
| Cow position: | chr7:64239444-64239119 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-331 |
| Cow position: | chr7:1609088-1608763 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 105 |
| Conread position: | 3-333 |
| Cow position: | chr7:27788503-27788831 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 120 |
| Conread position: | 3-333 |
| Cow position: | chr7:34221297-34220973 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 275, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:444711-444384 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:6627857-6627529 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 121 |
| Conread position: | 3-334 |
| Cow position: | chr7:7260069-7260395 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 79 |
| Conread position: | 3-334 |
| Cow position: | chr7:8336911-8337239 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:10429877-10429548 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:11462591-11462262 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:13532365-13532031 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:14138046-14137717 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 122 |
| Conread position: | 3-334 |
| Cow position: | chr7:20773790-20773467 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 19 |
| Conread position: | 3-334 |
| Cow position: | chr7:20797903-20797576 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 110 |
| Conread position: | 3-334 |
| Cow position: | chr7:21312002-21312317 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 132, 75 |
| Conread position: | 3-334 |
| Cow position: | chr7:21986951-21987281 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:24934011-24933681 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:27100741-27100414 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 118 |
| Conread position: | 3-334 |
| Cow position: | chr7:33333111-33333439 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:34416800-34416472 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 115 |
| Conread position: | 3-334 |
| Cow position: | chr7:34487461-34487790 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:38398367-38398694 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 160, 125 |
| Conread position: | 3-334 |
| Cow position: | chr7:39793404-39793733 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 122 |
| Conread position: | 3-334 |
| Cow position: | chr7:45947605-45947275 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:46747538-46747867 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:48804888-48804559 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:52763833-52764162 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:55040938-55040609 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:61809556-61809885 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:62445604-62445275 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr7:65812370-65812700 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 121 |
| Conread position: | 3-334 |
| Cow position: | chr7:66070578-66070253 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 157, 33 |
| Conread position: | 3-334 |
| Cow position: | chr7:67676619-67676947 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 4-334 |
| Cow position: | chr7:55536378-55536048 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 119 |
| Conread position: | 5-333 |
| Cow position: | chr7:42871692-42872019 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 118 |
| Conread position: | 5-334 |
| Cow position: | chr7:39133026-39133356 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 122 |
| Conread position: | 7-334 |
| Cow position: | chr7:5308563-5308230 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 63, 126 |
| Conread position: | 25-209 |
| Cow position: | chr7:49828765-49828574 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 137, 98 |
| Conread position: | 25-333 |
| Cow position: | chr7:14341-14035 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 25-334 |
| Cow position: | chr7:8143406-8143100 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 19 |
| Conread position: | 25-334 |
| Cow position: | chr7:21233435-21233133 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 98 |
| Conread position: | 25-334 |
| Cow position: | chr7:51015820-51016118 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 249, 27 |
| Conread position: | 25-334 |
| Cow position: | chr7:60728884-60728580 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 96 |
| Conread position: | 25-334 |
| Cow position: | chr7:61579071-61579377 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 39-334 |
| Cow position: | chr7:526530-526823 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 235, 84 |
| Conread position: | 45-170 |
| Cow position: | chr7:40178977-40179102 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 79 |
| Conread position: | 45-334 |
| Cow position: | chr7:27711021-27711304 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 78 |
| Conread position: | 52-209 |
| Cow position: | chr7:40201550-40201714 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 108, 5 |
| Conread position: | 56-334 |
| Cow position: | chr7:949141-949421 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 56-334 |
| Cow position: | chr7:33067126-33066850 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 57-332 |
| Cow position: | chr7:3121599-3121871 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 66 |
| Conread position: | 70-334 |
| Cow position: | chr7:34150555-34150816 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 204, 58 |
| Conread position: | 88-334 |
| Cow position: | chr7:37010336-37010092 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 186, 35 |
| Conread position: | 92-333 |
| Cow position: | chr7:64247952-64247714 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 182, 31 |
| Conread position: | 92-334 |
| Cow position: | chr7:40320903-40321140 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 92, 31 |
| Conread position: | 105-334 |
| Cow position: | chr7:27459082-27458853 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 205-334 |
| Cow position: | chr7:112348-112485 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 211-334 |
| Cow position: | chr7:996670-996797 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 63, 117 |
Show alignments to all cow chromosomes.