Cow genome map
| Conread name: | rsag05_b2.y1 |
| Conread position: | 1-209 |
| Cow position: | chr9:827723-827508 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 1-278 |
| Cow position: | chr9:28000903-28001175 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 65, 128 |
| Conread position: | 1-334 |
| Cow position: | chr9:18508441-18508113 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 122 |
| Conread position: | 3-198 |
| Cow position: | chr9:32970330-32970532 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 163 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 160, 105 |
| Conread position: | 3-199 |
| Cow position: | chr9:44384650-44384854 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 120 |
| Conread position: | 3-209 |
| Cow position: | chr9:4533881-4534095 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 160, 70 |
| Conread position: | 3-209 |
| Cow position: | chr9:10976502-10976716 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-209 |
| Cow position: | chr9:20939698-20939911 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-209 |
| Cow position: | chr9:26567990-26568196 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 147, 28 |
| Conread position: | 3-209 |
| Cow position: | chr9:27935767-27935981 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-209 |
| Cow position: | chr9:30300842-30300628 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-209 |
| Cow position: | chr9:50093850-50093636 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-330 |
| Cow position: | chr9:2871720-2872044 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-331 |
| Cow position: | chr9:27036289-27036613 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 32 |
| Conread position: | 3-331 |
| Cow position: | chr9:28023187-28023512 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 120 |
| Conread position: | 3-331 |
| Cow position: | chr9:59537487-59537814 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 122 |
| Conread position: | 3-333 |
| Cow position: | chr9:650640-650310 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 3-333 |
| Cow position: | chr9:2679654-2679987 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 77 |
| Conread position: | 3-334 |
| Cow position: | chr9:779432-779106 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 40 |
| Conread position: | 3-334 |
| Cow position: | chr9:1250610-1250282 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 45 |
| Conread position: | 3-334 |
| Cow position: | chr9:2172327-2172655 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 182 |
| Conread position: | 3-334 |
| Cow position: | chr9:4307975-4307654 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 272, 63 |
| Conread position: | 3-334 |
| Cow position: | chr9:8781522-8781212 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 271, 53 |
| Conread position: | 3-334 |
| Cow position: | chr9:9014460-9014786 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 160, 40 |
| Conread position: | 3-334 |
| Cow position: | chr9:13474388-13474065 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 119 |
| Conread position: | 3-334 |
| Cow position: | chr9:17304588-17304260 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 92 |
| Conread position: | 3-334 |
| Cow position: | chr9:19158146-19157813 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:21410694-21411021 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 40 |
| Conread position: | 3-334 |
| Cow position: | chr9:25903911-25904237 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 74 |
| Conread position: | 3-334 |
| Cow position: | chr9:26101883-26101554 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 44 |
| Conread position: | 3-334 |
| Cow position: | chr9:26737297-26737637 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 100 |
| Conread position: | 3-334 |
| Cow position: | chr9:27783572-27783901 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:30673766-30674093 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:30828128-30828456 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:31066105-31066434 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:31808962-31809292 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:37161427-37161101 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:37969822-37969510 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 3-334 |
| Cow position: | chr9:38677531-38677860 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:42311065-42311407 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:47043347-47043676 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 3-334 |
| Cow position: | chr9:50792100-50792431 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 122 |
| Conread position: | 3-334 |
| Cow position: | chr9:51180792-51180464 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 58 |
| Conread position: | 4-333 |
| Cow position: | chr9:2212528-2212854 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 119 |
| Conread position: | 7-334 |
| Cow position: | chr9:7004122-7004449 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 8-334 |
| Cow position: | chr9:1074784-1074459 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 115 |
| Conread position: | 10-334 |
| Cow position: | chr9:46041853-46041536 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 27 |
| Conread position: | 20-334 |
| Cow position: | chr9:5142101-5142410 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 100, 86 |
| Conread position: | 25-195 |
| Cow position: | chr9:54681337-54681160 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 135, 47 |
| Conread position: | 25-332 |
| Cow position: | chr9:1994998-1994693 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 25-334 |
| Cow position: | chr9:5005394-5005702 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 98 |
| Conread position: | 25-334 |
| Cow position: | chr9:22436362-22436665 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 136, 98 |
| Conread position: | 36-334 |
| Cow position: | chr9:56303032-56302736 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 87 |
| Conread position: | 42-334 |
| Cow position: | chr9:9647568-9647857 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 233, 81 |
| Conread position: | 44-334 |
| Cow position: | chr9:6250711-6251000 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 48-334 |
| Cow position: | chr9:6709390-6709674 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 53-334 |
| Cow position: | chr9:29026486-29026209 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 70 |
| Conread position: | 56-209 |
| Cow position: | chr9:3804793-3804950 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 60-331 |
| Cow position: | chr9:20176281-20176000 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 96, 65 |
| Conread position: | 60-333 |
| Cow position: | chr9:43665110-43665377 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 71-334 |
| Cow position: | chr9:47004186-47004447 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 203, 52 |
| Conread position: | 82-334 |
| Cow position: | chr9:17312845-17313090 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 192, 41 |
| Conread position: | 114-334 |
| Cow position: | chr9:31090675-31090894 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 115-329 |
| Cow position: | chr9:34769642-34769855 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 159, 8 |
| Conread position: | 128-334 |
| Cow position: | chr9:16177102-16177303 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 146, 32 |
| Conread position: | 203-334 |
| Cow position: | chr9:32970642-32970775 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 206-334 |
| Cow position: | chr9:31112705-31112841 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 209-334 |
| Cow position: | chr9:1982408-1982541 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 73, 64 |
Show alignments to all cow chromosomes.