Cow genome map
| Conread name: | rsin05_m18.y1 |
| Conread position: | 1-276 |
| Cow position: | chr11:35253009-35253276 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 56 |
| Conread position: | 1-281 |
| Cow position: | chr11:25183326-25183053 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 27 |
| Conread position: | 1-308 |
| Cow position: | chr11:21897392-21897705 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 105 |
| Conread position: | 1-309 |
| Cow position: | chr11:10092964-10092651 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 33 |
| Conread position: | 1-309 |
| Cow position: | chr11:53429731-53430049 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:418431-418750 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 101 |
| Conread position: | 1-311 |
| Cow position: | chr11:3495269-3494955 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 50 |
| Conread position: | 1-311 |
| Cow position: | chr11:4267857-4268171 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 33 |
| Conread position: | 1-311 |
| Cow position: | chr11:7228544-7228227 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:17548450-17548149 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 132 |
| Conread position: | 1-311 |
| Cow position: | chr11:24292745-24292430 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 1-311 |
| Cow position: | chr11:26122631-26122947 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 45 |
| Conread position: | 1-311 |
| Cow position: | chr11:26549791-26549473 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:30201399-30201714 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:30254518-30254205 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 61 |
| Conread position: | 1-311 |
| Cow position: | chr11:32078489-32078809 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:33602339-33602659 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:44154797-44155105 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:47737255-47737567 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 49 |
| Conread position: | 1-311 |
| Cow position: | chr11:63391185-63391505 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:67296718-67297035 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 46 |
| Conread position: | 1-311 |
| Cow position: | chr11:71331793-71331476 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:74346695-74346388 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 95 |
| Conread position: | 1-311 |
| Cow position: | chr11:75392543-75392223 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr11:85391533-85391853 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-312 |
| Cow position: | chr11:41168404-41168725 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-379 |
| Cow position: | chr11:15994452-15994056 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 36 |
| Conread position: | 1-384 |
| Cow position: | chr11:4054009-4054415 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 56 |
| Conread position: | 2-309 |
| Cow position: | chr11:9387539-9387841 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 34 |
| Conread position: | 2-311 |
| Cow position: | chr11:44580940-44581257 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 2-311 |
| Cow position: | chr11:56917713-56918018 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 2-311 |
| Cow position: | chr11:78358071-78357753 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 2-379 |
| Cow position: | chr11:30121356-30121751 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 293 |
| Conread position: | 2-384 |
| Cow position: | chr11:9154900-9155295 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 32 |
| Conread position: | 3-302 |
| Cow position: | chr11:44254365-44254064 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 170 |
| Conread position: | 3-309 |
| Cow position: | chr11:22934301-22934615 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 0 |
| Conread position: | 3-311 |
| Cow position: | chr11:10850409-10850094 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 0 |
| Conread position: | 3-311 |
| Cow position: | chr11:19061785-19062096 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 278 |
| Conread position: | 3-311 |
| Cow position: | chr11:19100194-19100511 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 3-311 |
| Cow position: | chr11:52421758-52421443 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 5-305 |
| Cow position: | chr11:78780848-78781151 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 11-311 |
| Cow position: | chr11:40403481-40403780 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 13-311 |
| Cow position: | chr11:4033120-4033421 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 38 |
| Conread position: | 13-311 |
| Cow position: | chr11:15987531-15987227 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 35 |
| Conread position: | 13-311 |
| Cow position: | chr11:23882289-23881981 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr11:28227501-28227799 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 21 |
| Conread position: | 13-311 |
| Cow position: | chr11:32478534-32478833 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 265 |
| Conread position: | 13-311 |
| Cow position: | chr11:38600659-38600961 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 33 |
| Conread position: | 13-311 |
| Cow position: | chr11:41744839-41744531 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr11:47973573-47973881 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr11:78791786-78792094 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 14-311 |
| Cow position: | chr11:17105404-17105708 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 14-311 |
| Cow position: | chr11:66731434-66731130 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 233 |
| Conread position: | 15-311 |
| Cow position: | chr11:67445965-67446269 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 55 |
| Conread position: | 15-311 |
| Cow position: | chr11:67452931-67452625 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 17-311 |
| Cow position: | chr11:12096069-12095765 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 26-311 |
| Cow position: | chr11:24395580-24395290 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 9 |
| Conread position: | 29-311 |
| Cow position: | chr11:39151187-39150902 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 6 |
| Conread position: | 37-311 |
| Cow position: | chr11:7720132-7720411 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 56 |
| Conread position: | 37-311 |
| Cow position: | chr11:82347157-82347430 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 214, 55 |
| Conread position: | 38-311 |
| Cow position: | chr11:261453-261709 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 214, 88 |
| Conread position: | 42-311 |
| Cow position: | chr11:30190053-30189780 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 53-376 |
| Cow position: | chr11:12950907-12951260 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 115 |
| Conread position: | 63-311 |
| Cow position: | chr11:29666359-29666614 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 119-311 |
| Cow position: | chr11:47758088-47758290 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 82, 65 |
| Conread position: | 133-311 |
| Cow position: | chr11:5483384-5483199 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 154 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 159-311 |
| Cow position: | chr11:1493597-1493758 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 60, 39 |
| Conread position: | 171-311 |
| Cow position: | chr11:12317885-12318035 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 174-311 |
| Cow position: | chr11:66860359-66860505 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 215-311 |
| Cow position: | chr11:58138497-58138394 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.