Cow genome map
| Conread name: | rsin05_m18.y1 |
| Conread position: | 1-277 |
| Cow position: | chr12:18467367-18467089 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 125 |
| Conread position: | 1-292 |
| Cow position: | chr12:18585250-18584951 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-309 |
| Cow position: | chr12:23138746-23139059 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 46 |
| Conread position: | 1-310 |
| Cow position: | chr12:251265-251580 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 130 |
| Conread position: | 1-311 |
| Cow position: | chr12:1407410-1407090 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 1-311 |
| Cow position: | chr12:3717696-3718016 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 1-311 |
| Cow position: | chr12:25260937-25261255 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 1-311 |
| Cow position: | chr12:42605602-42605918 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 245 |
| Conread position: | 2-309 |
| Cow position: | chr12:28834749-28835065 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 100 |
| Conread position: | 2-309 |
| Cow position: | chr12:42856953-42857267 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 2-311 |
| Cow position: | chr12:3179945-3179630 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 218 |
| Conread position: | 2-311 |
| Cow position: | chr12:8675496-8675817 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-311 |
| Cow position: | chr12:11100820-11100505 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 0 |
| Conread position: | 3-311 |
| Cow position: | chr12:22747787-22747473 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 224 |
| Conread position: | 3-311 |
| Cow position: | chr12:28764457-28764772 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 256 |
| Conread position: | 3-311 |
| Cow position: | chr12:30686317-30686002 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 187 |
| Conread position: | 3-311 |
| Cow position: | chr12:36212830-36212510 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 3-384 |
| Cow position: | chr12:24980258-24979853 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 13-310 |
| Cow position: | chr12:22571409-22571107 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 192 |
| Conread position: | 13-311 |
| Cow position: | chr12:12755593-12755901 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr12:20460659-20460964 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 13-311 |
| Cow position: | chr12:24993405-24993713 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr12:25266771-25267079 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr12:27853385-27853701 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr12:33925957-33926265 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-312 |
| Cow position: | chr12:21430525-21430216 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 14-311 |
| Cow position: | chr12:37561569-37561266 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 116 |
| Conread position: | 15-368 |
| Cow position: | chr12:22203115-22203479 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 19 |
| Conread position: | 16-311 |
| Cow position: | chr12:24432333-24432631 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 25-311 |
| Cow position: | chr12:19872834-19872543 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 27-384 |
| Cow position: | chr12:21091187-21091559 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 29-310 |
| Cow position: | chr12:23160348-23160629 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 191, 126 |
| Conread position: | 66-311 |
| Cow position: | chr12:24030434-24030687 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 50 |
| Conread position: | 83-311 |
| Cow position: | chr12:27930261-27930496 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 92-311 |
| Cow position: | chr12:14213684-14213913 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 112-384 |
| Cow position: | chr12:15949340-15949638 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 133-311 |
| Cow position: | chr12:31331882-31332067 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 146-311 |
| Cow position: | chr12:15775837-15775662 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 149 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 165-311 |
| Cow position: | chr12:25097830-25097974 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 174-311 |
| Cow position: | chr12:14659948-14660086 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 77, 13 |
| Conread position: | 174-311 |
| Cow position: | chr12:20995690-20995832 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.