Cow genome map
Conread name: | rsin05_m18.y1 |
Conread position: | 1-277 |
Cow position: | chr13:60921407-60921667 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 196 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 162, 24 |
Conread position: | 1-308 |
Cow position: | chr13:32922907-32923221 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 33 |
Conread position: | 1-309 |
Cow position: | chr13:28527541-28527857 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 0 |
Conread position: | 1-309 |
Cow position: | chr13:32549125-32548808 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 115 |
Conread position: | 1-310 |
Cow position: | chr13:13902227-13901914 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 253, 158 |
Conread position: | 1-310 |
Cow position: | chr13:26846844-26846539 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 34 |
Conread position: | 1-311 |
Cow position: | chr13:4733899-4733580 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 0 |
Conread position: | 1-311 |
Cow position: | chr13:4943751-4943434 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 250, 0 |
Conread position: | 1-311 |
Cow position: | chr13:5230583-5230896 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 253, 45 |
Conread position: | 1-311 |
Cow position: | chr13:11389573-11389253 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 0 |
Conread position: | 1-311 |
Cow position: | chr13:15279426-15279744 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 17 |
Conread position: | 1-311 |
Cow position: | chr13:15447130-15447430 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 277, 33 |
Conread position: | 1-311 |
Cow position: | chr13:17310783-17310465 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 54 |
Conread position: | 1-311 |
Cow position: | chr13:18330760-18331060 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 253, 88 |
Conread position: | 1-311 |
Cow position: | chr13:30305558-30305243 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 253, 61 |
Conread position: | 1-311 |
Cow position: | chr13:30652919-30653237 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 184 |
Conread position: | 1-311 |
Cow position: | chr13:33333982-33334296 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 253, 210 |
Conread position: | 1-311 |
Cow position: | chr13:34039975-34040297 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 0 |
Conread position: | 1-311 |
Cow position: | chr13:34509447-34509761 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 253, 27 |
Conread position: | 1-311 |
Cow position: | chr13:50191259-50191580 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 0 |
Conread position: | 1-380 |
Cow position: | chr13:47368539-47368134 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 68 |
Conread position: | 2-305 |
Cow position: | chr13:21906572-21906882 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 36 |
Conread position: | 2-309 |
Cow position: | chr13:35759922-35759607 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 91 |
Conread position: | 2-309 |
Cow position: | chr13:60698435-60698745 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 74 |
Conread position: | 2-311 |
Cow position: | chr13:15922093-15922409 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 252, 0 |
Conread position: | 2-311 |
Cow position: | chr13:23455804-23455485 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 0 |
Conread position: | 2-311 |
Cow position: | chr13:30240914-30240604 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 14 |
Conread position: | 2-311 |
Cow position: | chr13:32734822-32735138 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 180 |
Conread position: | 2-311 |
Cow position: | chr13:54239061-54239379 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 90 |
Conread position: | 3-308 |
Cow position: | chr13:53543809-53544111 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 230 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 16, 34 |
Conread position: | 3-311 |
Cow position: | chr13:3481499-3481811 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 226 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 100, 55 |
Conread position: | 3-311 |
Cow position: | chr13:4735641-4735324 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 0 |
Conread position: | 3-311 |
Cow position: | chr13:30470011-30470317 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 251, 216 |
Conread position: | 4-311 |
Cow position: | chr13:25381766-25381452 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 98 |
Conread position: | 4-311 |
Cow position: | chr13:34344276-34343959 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 0 |
Conread position: | 4-311 |
Cow position: | chr13:34870325-34870010 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 107 |
Conread position: | 13-311 |
Cow position: | chr13:562033-562341 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 206, 0 |
Conread position: | 13-311 |
Cow position: | chr13:5499633-5499932 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 265, 184 |
Conread position: | 13-311 |
Cow position: | chr13:19566072-19565763 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 80 |
Conread position: | 13-311 |
Cow position: | chr13:35539520-35539211 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 0 |
Conread position: | 13-311 |
Cow position: | chr13:49613186-49613487 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 37 |
Conread position: | 13-311 |
Cow position: | chr13:49976023-49975724 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 238, 37 |
Conread position: | 13-311 |
Cow position: | chr13:60647231-60647533 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 37 |
Conread position: | 14-311 |
Cow position: | chr13:31728545-31728850 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 145 |
Conread position: | 24-311 |
Cow position: | chr13:3651919-3652214 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 0 |
Conread position: | 25-311 |
Cow position: | chr13:44463586-44463885 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 211 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 20, 54 |
Conread position: | 26-311 |
Cow position: | chr13:7049981-7049697 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 225, 9 |
Conread position: | 53-311 |
Cow position: | chr13:14400791-14401052 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 49 |
Conread position: | 80-311 |
Cow position: | chr13:4667377-4667138 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 164 |
Alignm E-value: | 6e-21 |
Alignm gaps (pig, cow): | 83, 11 |
Conread position: | 80-311 |
Cow position: | chr13:8068869-8069107 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 10 |
Conread position: | 81-311 |
Cow position: | chr13:11762350-11762589 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 90 |
Conread position: | 89-311 |
Cow position: | chr13:19044286-19044514 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 177 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 97, 124 |
Conread position: | 94-311 |
Cow position: | chr13:21698551-21698325 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 184 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 108-311 |
Cow position: | chr13:60511835-60511623 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 174 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 17 |
Conread position: | 114-310 |
Cow position: | chr13:46459654-46459862 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 156 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 10, 147 |
Conread position: | 118-311 |
Cow position: | chr13:9300131-9299934 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 162 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 136, 98 |
Conread position: | 121-384 |
Cow position: | chr13:16252275-16252560 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 89 |
Conread position: | 135-309 |
Cow position: | chr13:31609562-31609742 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 156 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 178 |
Conread position: | 146-276 |
Cow position: | chr13:34322778-34322915 (view UCSC Genome Browser custom track) |
Alignm length: | 138 |
Alignm identity: | 116 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 155-384 |
Cow position: | chr13:6360059-6359801 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 196 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 64, 0 |
Conread position: | 156-384 |
Cow position: | chr13:37489329-37489569 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 182 |
Alignm E-value: | 9e-35 |
Alignm gaps (pig, cow): | 122, 82 |
Conread position: | 164-311 |
Cow position: | chr13:16921664-16921507 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 134 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 182-311 |
Cow position: | chr13:54312288-54312150 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 112 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 30, 59 |
Show alignments to all cow chromosomes.