Cow genome map

Conread name: rsin05_m18.y1

Conread position: 1-277
Cow position: chr13:60921407-60921667 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 162, 24

Conread position: 1-308
Cow position: chr13:32922907-32923221 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 33

Conread position: 1-309
Cow position: chr13:28527541-28527857 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-309
Cow position: chr13:32549125-32548808 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 115

Conread position: 1-310
Cow position: chr13:13902227-13901914 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 158

Conread position: 1-310
Cow position: chr13:26846844-26846539 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 1-311
Cow position: chr13:4733899-4733580 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr13:4943751-4943434 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 0

Conread position: 1-311
Cow position: chr13:5230583-5230896 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 45

Conread position: 1-311
Cow position: chr13:11389573-11389253 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr13:15279426-15279744 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 17

Conread position: 1-311
Cow position: chr13:15447130-15447430 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 33

Conread position: 1-311
Cow position: chr13:17310783-17310465 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 54

Conread position: 1-311
Cow position: chr13:18330760-18331060 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 88

Conread position: 1-311
Cow position: chr13:30305558-30305243 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 61

Conread position: 1-311
Cow position: chr13:30652919-30653237 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 184

Conread position: 1-311
Cow position: chr13:33333982-33334296 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 210

Conread position: 1-311
Cow position: chr13:34039975-34040297 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr13:34509447-34509761 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 27

Conread position: 1-311
Cow position: chr13:50191259-50191580 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 0

Conread position: 1-380
Cow position: chr13:47368539-47368134 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 68

Conread position: 2-305
Cow position: chr13:21906572-21906882 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 36

Conread position: 2-309
Cow position: chr13:35759922-35759607 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 91

Conread position: 2-309
Cow position: chr13:60698435-60698745 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 74

Conread position: 2-311
Cow position: chr13:15922093-15922409 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 0

Conread position: 2-311
Cow position: chr13:23455804-23455485 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-311
Cow position: chr13:30240914-30240604 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 14

Conread position: 2-311
Cow position: chr13:32734822-32735138 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 180

Conread position: 2-311
Cow position: chr13:54239061-54239379 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 90

Conread position: 3-308
Cow position: chr13:53543809-53544111 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 16, 34

Conread position: 3-311
Cow position: chr13:3481499-3481811 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 100, 55

Conread position: 3-311
Cow position: chr13:4735641-4735324 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 0

Conread position: 3-311
Cow position: chr13:30470011-30470317 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 216

Conread position: 4-311
Cow position: chr13:25381766-25381452 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 98

Conread position: 4-311
Cow position: chr13:34344276-34343959 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 0

Conread position: 4-311
Cow position: chr13:34870325-34870010 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 107

Conread position: 13-311
Cow position: chr13:562033-562341 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr13:5499633-5499932 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 184

Conread position: 13-311
Cow position: chr13:19566072-19565763 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 80

Conread position: 13-311
Cow position: chr13:35539520-35539211 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 13-311
Cow position: chr13:49613186-49613487 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 37

Conread position: 13-311
Cow position: chr13:49976023-49975724 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 37

Conread position: 13-311
Cow position: chr13:60647231-60647533 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 37

Conread position: 14-311
Cow position: chr13:31728545-31728850 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 145

Conread position: 24-311
Cow position: chr13:3651919-3652214 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 25-311
Cow position: chr13:44463586-44463885 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 20, 54

Conread position: 26-311
Cow position: chr13:7049981-7049697 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 9

Conread position: 53-311
Cow position: chr13:14400791-14401052 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 49

Conread position: 80-311
Cow position: chr13:4667377-4667138 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 11

Conread position: 80-311
Cow position: chr13:8068869-8069107 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 10

Conread position: 81-311
Cow position: chr13:11762350-11762589 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 90

Conread position: 89-311
Cow position: chr13:19044286-19044514 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 97, 124

Conread position: 94-311
Cow position: chr13:21698551-21698325 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 108-311
Cow position: chr13:60511835-60511623 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 17

Conread position: 114-310
Cow position: chr13:46459654-46459862 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 147

Conread position: 118-311
Cow position: chr13:9300131-9299934 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 162
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 136, 98

Conread position: 121-384
Cow position: chr13:16252275-16252560 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 89

Conread position: 135-309
Cow position: chr13:31609562-31609742 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 178

Conread position: 146-276
Cow position: chr13:34322778-34322915 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 116
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 155-384
Cow position: chr13:6360059-6359801 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 196
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 64, 0

Conread position: 156-384
Cow position: chr13:37489329-37489569 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 122, 82

Conread position: 164-311
Cow position: chr13:16921664-16921507 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 134
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 55, 0

Conread position: 182-311
Cow position: chr13:54312288-54312150 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 59

Show alignments to all cow chromosomes.