Cow genome map

Conread name: rsin05_m18.y1

Conread position: 1-304
Cow position: chr15:42939150-42938837 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-310
Cow position: chr15:4727446-4727129 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 1-311
Cow position: chr15:2806637-2806953 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr15:3258805-3259118 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 95

Conread position: 1-311
Cow position: chr15:4387990-4387675 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 45

Conread position: 1-311
Cow position: chr15:4639174-4638857 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 0

Conread position: 1-311
Cow position: chr15:5497296-5496982 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 198

Conread position: 1-311
Cow position: chr15:6563418-6563098 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr15:8358899-8358583 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 142, 42

Conread position: 1-311
Cow position: chr15:8753121-8752818 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 182, 51

Conread position: 1-311
Cow position: chr15:9395202-9394886 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 46

Conread position: 1-311
Cow position: chr15:12418469-12418787 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 31

Conread position: 1-311
Cow position: chr15:14579906-14580226 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 0

Conread position: 1-311
Cow position: chr15:15344864-15345184 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr15:18578951-18578632 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 148

Conread position: 1-311
Cow position: chr15:20405497-20405815 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 160

Conread position: 1-311
Cow position: chr15:20412838-20412519 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 15

Conread position: 1-311
Cow position: chr15:21663503-21663821 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-311
Cow position: chr15:27635668-27635348 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr15:31363706-31363386 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr15:42532161-42531841 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 1-311
Cow position: chr15:43292936-43293246 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 33

Conread position: 1-311
Cow position: chr15:51219981-51219662 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 0

Conread position: 1-384
Cow position: chr15:14756238-14755846 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 32

Conread position: 1-384
Cow position: chr15:20457292-20456889 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 52

Conread position: 2-304
Cow position: chr15:36356847-36357154 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 33

Conread position: 2-309
Cow position: chr15:4673484-4673167 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-309
Cow position: chr15:6551524-6551840 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 87

Conread position: 2-311
Cow position: chr15:2014739-2014427 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 203

Conread position: 2-311
Cow position: chr15:2900013-2900331 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 32

Conread position: 2-311
Cow position: chr15:6153692-6154009 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 33

Conread position: 2-311
Cow position: chr15:7262864-7262537 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 45

Conread position: 2-311
Cow position: chr15:7329529-7329839 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 232
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 19, 144

Conread position: 2-311
Cow position: chr15:12365644-12365338 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 53

Conread position: 2-311
Cow position: chr15:16189530-16189849 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-311
Cow position: chr15:24297433-24297114 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-311
Cow position: chr15:29969119-29969424 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 74

Conread position: 2-311
Cow position: chr15:38982890-38982571 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-384
Cow position: chr15:6119652-6119250 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 0

Conread position: 3-276
Cow position: chr15:32702500-32702763 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 174

Conread position: 3-278
Cow position: chr15:20354239-20354520 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 149, 30

Conread position: 3-310
Cow position: chr15:14574064-14574387 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 64, 39

Conread position: 3-311
Cow position: chr15:27748248-27747930 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 0

Conread position: 3-311
Cow position: chr15:32491651-32491968 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 0

Conread position: 3-311
Cow position: chr15:51911304-51911614 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 135

Conread position: 3-312
Cow position: chr15:7270579-7270265 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 210

Conread position: 11-311
Cow position: chr15:37472337-37472638 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 91

Conread position: 12-311
Cow position: chr15:21913753-21914056 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 169, 31

Conread position: 13-309
Cow position: chr15:32696394-32696076 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 51

Conread position: 13-311
Cow position: chr15:7565230-7564924 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 148

Conread position: 13-311
Cow position: chr15:10825698-10825393 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 112

Conread position: 13-311
Cow position: chr15:13430051-13429744 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr15:18229293-18228985 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr15:18265534-18265839 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 0

Conread position: 13-311
Cow position: chr15:20017249-20017557 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr15:21533901-21534202 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 229

Conread position: 13-311
Cow position: chr15:36330231-36330537 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 21

Conread position: 13-311
Cow position: chr15:50149550-50149242 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-384
Cow position: chr15:31586169-31586567 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 37

Conread position: 14-309
Cow position: chr15:6280854-6280553 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 21

Conread position: 20-311
Cow position: chr15:4917418-4917119 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 103

Conread position: 29-277
Cow position: chr15:6066301-6066549 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 49

Conread position: 29-311
Cow position: chr15:7882130-7881841 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 6

Conread position: 29-311
Cow position: chr15:24796098-24795808 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 100

Conread position: 33-311
Cow position: chr15:9014098-9013814 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 72

Conread position: 39-311
Cow position: chr15:16509066-16508785 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 133

Conread position: 42-311
Cow position: chr15:53411289-53411019 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 50

Conread position: 43-384
Cow position: chr15:29341854-29342190 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 14

Conread position: 98-310
Cow position: chr15:3721889-3722108 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 131-384
Cow position: chr15:36669747-36669491 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 121, 31

Conread position: 136-311
Cow position: chr15:4924239-4924054 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 167-311
Cow position: chr15:51767318-51767469 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 129
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 87, 0

Conread position: 174-308
Cow position: chr15:6224902-6224760 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 174-311
Cow position: chr15:314014-314159 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 121
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 175-326
Cow position: chr15:44072533-44072374 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 30

Conread position: 176-357
Cow position: chr15:17406586-17406398 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 76, 30

Conread position: 179-311
Cow position: chr15:581481-581338 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 182-370
Cow position: chr15:36279903-36280112 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 197-311
Cow position: chr15:4767190-4767066 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Show alignments to all cow chromosomes.