Cow genome map

Conread name: rsin05_m18.y1

Conread position: 1-276
Cow position: chr16:5526214-5526490 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 53

Conread position: 1-278
Cow position: chr16:18617246-18617517 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 34

Conread position: 1-292
Cow position: chr16:18495853-18496148 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 153

Conread position: 1-308
Cow position: chr16:25455570-25455883 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 265

Conread position: 1-309
Cow position: chr16:5655069-5654756 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 115

Conread position: 1-310
Cow position: chr16:5891897-5891589 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 91

Conread position: 1-311
Cow position: chr16:839175-838861 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 243

Conread position: 1-311
Cow position: chr16:1565785-1566096 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 33

Conread position: 1-311
Cow position: chr16:2409003-2409316 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 66

Conread position: 1-311
Cow position: chr16:2725328-2725647 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 1-311
Cow position: chr16:3144507-3144817 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 45

Conread position: 1-311
Cow position: chr16:3331802-3331489 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 155

Conread position: 1-311
Cow position: chr16:4462434-4462771 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 33

Conread position: 1-311
Cow position: chr16:7466505-7466185 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr16:7674567-7674887 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr16:8814212-8814532 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 1-311
Cow position: chr16:10440134-10439823 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 52

Conread position: 1-311
Cow position: chr16:15186959-15186644 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 33

Conread position: 1-311
Cow position: chr16:15980494-15980810 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 202

Conread position: 1-311
Cow position: chr16:19276022-19275710 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 133

Conread position: 1-311
Cow position: chr16:23250096-23250404 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 80

Conread position: 1-311
Cow position: chr16:27731490-27731807 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr16:29048922-29048602 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 1-311
Cow position: chr16:31586805-31587124 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 148

Conread position: 1-311
Cow position: chr16:36241038-36240731 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 33

Conread position: 1-311
Cow position: chr16:37478969-37479279 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 129

Conread position: 1-311
Cow position: chr16:39034811-39035126 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 15

Conread position: 1-311
Cow position: chr16:41033195-41032875 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 0

Conread position: 1-311
Cow position: chr16:41164868-41165180 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 52

Conread position: 1-311
Cow position: chr16:43895371-43895688 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr16:46102818-46103132 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 128, 143

Conread position: 1-311
Cow position: chr16:53445879-53446199 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr16:54323428-54323748 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-330
Cow position: chr16:20635622-20635956 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 175

Conread position: 1-349
Cow position: chr16:3149139-3149487 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 45

Conread position: 1-384
Cow position: chr16:2273954-2273549 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 161

Conread position: 1-384
Cow position: chr16:41161578-41161983 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 33

Conread position: 2-309
Cow position: chr16:4425984-4425669 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 196

Conread position: 2-311
Cow position: chr16:3031611-3031924 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 249

Conread position: 2-311
Cow position: chr16:3770120-3770437 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 2-311
Cow position: chr16:14663413-14663730 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 234

Conread position: 2-311
Cow position: chr16:25087501-25087189 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 31

Conread position: 2-311
Cow position: chr16:25343867-25343548 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 0

Conread position: 2-311
Cow position: chr16:26665607-26665303 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 186

Conread position: 2-311
Cow position: chr16:28194409-28194728 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 0

Conread position: 2-311
Cow position: chr16:40294280-40294590 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 106

Conread position: 2-384
Cow position: chr16:41684402-41684797 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 169

Conread position: 3-311
Cow position: chr16:1862332-1862025 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 32

Conread position: 3-311
Cow position: chr16:26991057-26991376 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 200

Conread position: 3-311
Cow position: chr16:29207322-29207646 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 45

Conread position: 3-311
Cow position: chr16:42162634-42162320 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 40

Conread position: 13-276
Cow position: chr16:3010715-3010454 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 37

Conread position: 13-309
Cow position: chr16:28168438-28168744 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-310
Cow position: chr16:30073273-30072964 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 42, 93

Conread position: 13-311
Cow position: chr16:34423-34117 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 150

Conread position: 13-311
Cow position: chr16:10373802-10374108 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 0

Conread position: 13-311
Cow position: chr16:11285097-11284796 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 37

Conread position: 13-311
Cow position: chr16:20277733-20277425 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr16:20642387-20642081 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 79

Conread position: 13-311
Cow position: chr16:23365032-23365335 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 22

Conread position: 13-311
Cow position: chr16:23876650-23876952 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 35

Conread position: 13-311
Cow position: chr16:24621818-24622123 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 253

Conread position: 13-311
Cow position: chr16:26652499-26652191 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-384
Cow position: chr16:16239219-16239614 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 43

Conread position: 14-309
Cow position: chr16:3348686-3348382 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 27

Conread position: 14-310
Cow position: chr16:1434076-1433764 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 14-311
Cow position: chr16:21189113-21188806 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 0

Conread position: 14-311
Cow position: chr16:23985189-23984882 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 14-311
Cow position: chr16:47403262-47402958 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 0

Conread position: 36-311
Cow position: chr16:25955706-25955990 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 11, 103

Conread position: 37-276
Cow position: chr16:5876199-5875963 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 7

Conread position: 37-311
Cow position: chr16:12536090-12536374 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 16

Conread position: 44-276
Cow position: chr16:25173130-25172898 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 175, 108

Conread position: 44-311
Cow position: chr16:49254403-49254676 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 87

Conread position: 46-308
Cow position: chr16:5590214-5589953 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 121, 58

Conread position: 52-311
Cow position: chr16:39645493-39645225 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 185

Conread position: 55-311
Cow position: chr16:2890674-2890940 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 68-311
Cow position: chr16:16031737-16031489 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 233

Conread position: 73-311
Cow position: chr16:56915289-56915533 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 146, 59

Conread position: 85-311
Cow position: chr16:25463100-25463332 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 71

Conread position: 96-311
Cow position: chr16:25126755-25126977 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 82

Conread position: 97-311
Cow position: chr16:10770675-10770456 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 83, 61

Conread position: 109-311
Cow position: chr16:818496-818286 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 110, 43

Conread position: 117-311
Cow position: chr16:25443408-25443205 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 162
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 94, 0

Conread position: 129-311
Cow position: chr16:5663604-5663419 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 155
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 125, 55

Conread position: 133-311
Cow position: chr16:4798958-4799144 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 87, 72

Conread position: 158-311
Cow position: chr16:55149969-55149809 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 61, 147

Conread position: 159-311
Cow position: chr16:16538541-16538384 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 133
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 56, 92

Conread position: 160-311
Cow position: chr16:416450-416298 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 131
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 116, 40

Conread position: 160-311
Cow position: chr16:39365149-39365308 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 59, 14

Conread position: 166-311
Cow position: chr16:28469053-28469208 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 134
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 174-311
Cow position: chr16:15568974-15568830 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 127
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 42, 81

Conread position: 186-311
Cow position: chr16:25259512-25259381 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 68, 125

Show alignments to all cow chromosomes.