Cow genome map
| Conread name: | rsin05_m18.y1 |
| Conread position: | 1-275 |
| Cow position: | chr18:16173935-16174207 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 45 |
| Conread position: | 1-287 |
| Cow position: | chr18:38160183-38160478 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-309 |
| Cow position: | chr18:51662825-51662507 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-309 |
| Cow position: | chr18:56484002-56484312 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 118 |
| Conread position: | 1-311 |
| Cow position: | chr18:1956493-1956813 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr18:14418652-14418329 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 0 |
| Conread position: | 1-311 |
| Cow position: | chr18:16464191-16464498 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 47 |
| Conread position: | 1-311 |
| Cow position: | chr18:21530201-21529884 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 1-311 |
| Cow position: | chr18:23801698-23801381 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-311 |
| Cow position: | chr18:27835409-27835728 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 200 |
| Conread position: | 1-311 |
| Cow position: | chr18:28969611-28969928 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr18:29863930-29864249 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 186 |
| Conread position: | 1-311 |
| Cow position: | chr18:32165257-32165569 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 33 |
| Conread position: | 1-311 |
| Cow position: | chr18:36511296-36510979 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 0 |
| Conread position: | 1-311 |
| Cow position: | chr18:36775951-36775632 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 66 |
| Conread position: | 1-311 |
| Cow position: | chr18:37508640-37508324 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 92 |
| Conread position: | 1-311 |
| Cow position: | chr18:38090681-38090989 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 1-311 |
| Cow position: | chr18:51484273-51483953 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr18:52630583-52630888 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 54 |
| Conread position: | 2-310 |
| Cow position: | chr18:20691516-20691819 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 152, 9 |
| Conread position: | 2-311 |
| Cow position: | chr18:14128613-14128921 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 82 |
| Conread position: | 2-311 |
| Cow position: | chr18:27168309-27167985 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 2-311 |
| Cow position: | chr18:40159001-40158685 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 0 |
| Conread position: | 2-311 |
| Cow position: | chr18:52655487-52655173 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 87 |
| Conread position: | 3-311 |
| Cow position: | chr18:11272171-11272487 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 242 |
| Conread position: | 3-384 |
| Cow position: | chr18:19355036-19354634 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 4-384 |
| Cow position: | chr18:54026473-54026075 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 189 |
| Conread position: | 13-276 |
| Cow position: | chr18:5202190-5201922 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr18:603801-604097 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 37 |
| Conread position: | 13-311 |
| Cow position: | chr18:3755608-3755300 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr18:26243914-26244219 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 13-311 |
| Cow position: | chr18:28928927-28929228 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 53 |
| Conread position: | 13-311 |
| Cow position: | chr18:30762294-30762602 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr18:37700830-37701133 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 37 |
| Conread position: | 13-311 |
| Cow position: | chr18:51696957-51696649 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 13-311 |
| Cow position: | chr18:55417388-55417083 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 14-326 |
| Cow position: | chr18:33101984-33101666 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 20 |
| Conread position: | 19-311 |
| Cow position: | chr18:1047005-1046713 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 194, 24 |
| Conread position: | 37-311 |
| Cow position: | chr18:40483645-40483365 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 38 |
| Conread position: | 38-311 |
| Cow position: | chr18:39813008-39813273 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 176, 12 |
| Conread position: | 43-305 |
| Cow position: | chr18:15171510-15171243 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 73-311 |
| Cow position: | chr18:25941507-25941259 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 82-311 |
| Cow position: | chr18:32656285-32656046 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 82-311 |
| Cow position: | chr18:44148820-44149050 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 93 |
| Conread position: | 83-311 |
| Cow position: | chr18:9661310-9661075 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 137, 153 |
| Conread position: | 87-311 |
| Cow position: | chr18:19457459-19457221 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 119-311 |
| Cow position: | chr18:14132953-14132751 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 135-311 |
| Cow position: | chr18:28767344-28767158 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 157 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 145-309 |
| Cow position: | chr18:47744027-47743853 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 149 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 154-311 |
| Cow position: | chr18:29070973-29070807 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 160-311 |
| Cow position: | chr18:36310175-36310018 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 180-311 |
| Cow position: | chr18:37664897-37664757 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 57 |
Show alignments to all cow chromosomes.